Mercurial > repos > iuc > package_scikit_learn_0_13

comparison tool_dependencies.xml @ 2:4779579ef7e2 draft

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author bgruening
date Tue, 19 Nov 2013 08:15:59 -0500
parents 84b82d4df8b8
children 13384c7e42c0
comparison
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1:84b82d4df8b8 2:4779579ef7e2
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="lapack" version="3.4.2">
4 <repository changeset_revision="60957bd68fe2" name="package_lapack_3_4" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
5 </package>
6 <package name="atlas" version="3.10.1">
7 <repository changeset_revision="3508de0ebae1" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
8 </package>
9 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
10 <repository changeset_revision="b7ff4a8c58df" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
11 </package> 5 </package>
12 <package name="scipy" version="0.12.0"> 6 <package name="scipy" version="0.12.0">
13 <repository changeset_revision="8ed7d7b6907a" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 7 <repository changeset_revision="3c1bf479158c" name="package_scipy_0_12" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
14 </package> 8 </package>
15 <package name="matplotlib" version="1.2.1"> 9 <package name="matplotlib" version="1.2.1">
16 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 10 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
17 </package> 11 </package>
18
19 <package name="scikit_learn" version="0.13.1"> 12 <package name="scikit_learn" version="0.13.1">
20 <install version="1.0"> 13 <install version="1.0">
21 <actions> 14 <actions>
22 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action> 15 <action type="download_by_url">https://pypi.python.org/packages/source/s/scikit-learn/scikit-learn-0.13.1.tar.gz</action>
23 <action type="set_environment_for_install"> 16 <action type="set_environment_for_install">
24 <repository changeset_revision="3508de0ebae1" name="package_atlas_3_10" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 17 <repository changeset_revision="73854db866e7" name="package_lapack_3_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
25 <package name="atlas" version="3.10.1" />
26 </repository>
27 <repository changeset_revision="60957bd68fe2" name="package_lapack_3_4" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
28 <package name="lapack" version="3.4.2" /> 18 <package name="lapack" version="3.4.2" />
29 </repository> 19 </repository>
30 <repository changeset_revision="b7ff4a8c58df" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 20 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
31 <package name="numpy" version="1.7.1" /> 21 <package name="numpy" version="1.7.1" />
32 </repository> 22 </repository>
33 <repository changeset_revision="8ed7d7b6907a" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 23 <repository changeset_revision="3c1bf479158c" name="package_scipy_0_12" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
34 <package name="scipy" version="0.12.0" /> 24 <package name="scipy" version="0.12.0" />
35 </repository> 25 </repository>
36 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 26 <repository changeset_revision="966f29c955b9" name="package_matplotlib_1_2" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
37 <package name="matplotlib" version="1.2.1" /> 27 <package name="matplotlib" version="1.2.1" />
38 </repository> 28 </repository>
39 </action> 29 </action>
40 30
41 <action type="make_directory">$INSTALL_DIR/lib/python</action> 31 <action type="make_directory">$INSTALL_DIR/lib/python</action>
42 <action language="cheetah" type="template_command"> 32 <action language="cheetah" type="template_command">
43 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp; 33 export PYTHONPATH=\$PYTHONPATH:$env.INSTALL_DIR/lib/python &amp;&amp;
44
45 #if env.get('ATLAS_LIB_DIR', False):
46 export ATLAS=$env.ATLAS_LIB_DIR/libatlas.a &amp;&amp;
47 #end if
48 #if env.get('LAPACK_LIB_DIR', False):
49 export BLAS=$env.LAPACK_LIB_DIR/libblas.a &amp;&amp;
50 export LAPACK=$env.LAPACK_LIB_DIR/liblapack.a &amp;&amp;
51 #end if
52 34
53 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp; 35 export PATH=\$PATH:$env.PATH_NUMPY &amp;&amp;
54 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp; 36 export PYTHONPATH=\$PYTHONPATH:$env.PYTHONPATH_NUMPY:$env.PYTHONPATH_SCIPY:$env.PYTHONPATH_MATPLOTLIB &amp;&amp;
55 37
56 python setup.py install --install-lib $env.INSTALL_DIR/lib/python 38 python setup.py install --install-lib $env.INSTALL_DIR/lib/python
66 48
67 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable> 49 <environment_variable action="set_to" name="PYTHONPATH_SCIKIT_LEARN">$INSTALL_DIR/lib/python</environment_variable>
68 </action> 50 </action>
69 </actions> 51 </actions>
70 </install> 52 </install>
71 <readme>Compiling scikit-learn requires a C compiler (typically gcc). The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.</readme> 53 <readme>
54 Compiling scikit-learn requires a C compiler (typically gcc).
55 The PYTHONPATH for scikit-learn can be accessed through PYTHONPATH_SCIKIT_LEARN.
56
57 Wrapper development: https://github.com/bgruening/galaxytools/tree/master/orphan_tool_dependencies
58 </readme>
72 </package> 59 </package>
73 </tool_dependency> 60 </tool_dependency>