Mercurial > repos > iuc > package_samtools_0_1_19

changeset 6:632f1a03db92 draft

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Uploaded
author iuc
date Tue, 22 Jul 2014 11:59:50 -0400
parents 40250a414486
children 8b98841b6b2f
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Apr 29 14:06:22 2014 -0400
+++ b/tool_dependencies.xml	Tue Jul 22 11:59:50 2014 -0400
@@ -1,16 +1,22 @@
 <?xml version="1.0"?>
 <tool_dependency>
     <package name="ncurses" version="5.9">
-        <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+        <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="zlib" version="1.2.8">
+        <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="samtools" version="0.1.19">
         <install version="1.0">
             <actions>
                 <action type="download_by_url">http://downloads.sourceforge.net/project/samtools/samtools/0.1.19/samtools-0.1.19.tar.bz2</action>
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
+                    <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="ncurses" version="5.9" />
                     </repository>
+                    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="zlib" version="1.2.8" />
+                    </repository>
                 </action>
                 <action type="shell_command">sed -i 's/-lcurses/-lncurses/' Makefile</action>
                 <action type="shell_command">sed -i -e "s|CFLAGS=\s*-g\s*-Wall\s*-O2\s*|CFLAGS= -g -Wall -O2 -I$NCURSES_INCLUDE_PATH/ncurses/ -I$NCURSES_INCLUDE_PATH -L$NCURSES_LIB_PATH|g" Makefile</action>