diff tool_dependencies.xml @ 0:14fc11f1b590 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tool_dependencies.xml	Fri Jun 27 19:11:03 2014 -0400
@@ -0,0 +1,87 @@
+<?xml version="1.0"?>
+<tool_dependency>
+  <package name="zlib" version="1.2.8">
+    <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="readline" version="6.2">
+    <repository changeset_revision="246f31787ca1" name="package_readline_6_2" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="bzlib" version="1.0.6">
+    <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="xz" version="5.0.5">
+    <repository changeset_revision="b6876995a7e8" name="package_xz_5_0_5" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="openssl" version="1.0.1g">
+    <repository changeset_revision="cdd0707dcedd" name="package_openssl_1_0" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="sqlite" version="3.8.3">
+    <repository changeset_revision="e3729818491f" name="package_sqlite_3_8_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="gdbm" version="1.11">
+    <repository changeset_revision="7367119a4afc" name="package_gdbm_1_11" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="ncurses" version="5.9">
+    <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+  </package>
+
+  <package name="python3" version="3.4.1">
+    <install version="1.0">
+      <actions>
+        <action type="download_by_url">https://www.python.org/ftp/python/2.7.7/Python-2.7.7.tgz</action>
+
+        <action type="set_environment_for_install">
+          <repository changeset_revision="03abe628fbe8" name="package_zlib_1_2_8" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="zlib" version="1.2.8" />
+          </repository>
+          <repository changeset_revision="246f31787ca1" name="package_readline_6_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="readline" version="6.2" />
+          </repository>
+          <repository changeset_revision="2dec91192fc7" name="package_bzlib_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="bzlib" version="1.0.6" />
+          </repository>
+          <repository changeset_revision="b6876995a7e8" name="package_xz_5_0_5" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="xz" version="5.0.5" />
+          </repository>
+          <repository changeset_revision="cdd0707dcedd" name="package_openssl_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="openssl" version="1.0.1g" />
+          </repository>
+          <repository changeset_revision="e3729818491f" name="package_sqlite_3_8_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="sqlite" version="3.8.3" />
+          </repository>
+          <repository changeset_revision="7367119a4afc" name="package_gdbm_1_11" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="gdbm" version="1.11" />
+          </repository>
+          <repository changeset_revision="f62fa47b852d" name="package_ncurses_5_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+            <package name="ncurses" version="5.9" />
+          </repository>
+        </action>
+
+        <action type="autoconf" />
+
+        <action type="set_environment">
+          <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+          <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[LD_LIBRARY_PATH]</environment_variable>
+          <!-- clear PYTHONPATH, otherwise we will get Galaxy's Python 2 libraries in the Python 3 path. -->
+          <environment_variable action="set_to" name="PYTHONPATH" />
+          <environment_variable action="set_to" name="PYTHONHOME">$INSTALL_DIR</environment_variable>
+          <environment_variable action="prepend_to" name="PKG_CONFIG_PATH">$INSTALL_DIR/lib/pkgconfig</environment_variable>
+        </action>
+      </actions>
+    </install>
+
+    <readme>
+      The Python programming language version 2.7.
+
+      http://www.python.org
+    </readme>
+
+  </package>
+</tool_dependency>