Mercurial > repos > iuc > package_perl_5_18

comparison tool_dependencies.xml @ 19:66db6ede3e0e draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_perl_5_18 commit 55b5863db6c3e6cf443917117ec362a8daad8122
author iuc
date Sun, 14 Feb 2016 09:19:37 -0500
parents 6f144bd786a8
children 318ccddfe301
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18:6f144bd786a8 19:66db6ede3e0e
1 <?xml version="1.0"?>
1 <tool_dependency> 2 <tool_dependency>
3 <package name="gnu_coreutils" version="8.22">
4 <repository changeset_revision="8b60cf3e0c07" name="package_gnu_coreutils_8_22" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package>
2 <package name="perl" version="5.18.1"> 6 <package name="perl" version="5.18.1">
3 <install version="1.0"> 7 <install version="1.0">
4 <actions> 8 <actions>
5
6 <!-- install perl --> 9 <!-- install perl -->
7 <action type="download_by_url">http://www.cpan.org/src/5.0/perl-5.18.1.tar.gz</action> 10 <action sha256sum="655e11a8ffba8853efcdce568a142c232600ed120ac24aaebb4e6efe74e85b2b" type="download_by_url">
11 https://depot.galaxyproject.org/software/perl/perl_5.18_src_all.tar.gz
12 </action>
8 <action type="shell_command">./Configure -des -Dprefix=$INSTALL_DIR -Dstartperl='#!/usr/bin/env perl'</action> 13 <action type="shell_command">./Configure -des -Dprefix=$INSTALL_DIR -Dstartperl='#!/usr/bin/env perl'</action>
9 <action type="make_install" /> 14 <action type="make_install" />
10 <action type="change_directory">..</action> 15 <action type="change_directory">..</action>
11 <action type="download_file">http://www.cpan.org/authors/id/A/AP/APEIRON/local-lib-1.008009.tar.gz</action> 16 <action sha256sum="5c69adb47ab828aa3e8b5be89b88cd49c6a0d0dae2e8b3bca17a9ce699190e7b" type="download_file">
17 http://www.cpan.org/authors/id/A/AP/APEIRON/local-lib-1.008009.tar.gz
18 </action>
12 <action type="shell_command">tar xfvz local-lib-1.008009.tar.gz</action> 19 <action type="shell_command">tar xfvz local-lib-1.008009.tar.gz</action>
13 <action type="change_directory">local-lib-1.008009</action> 20 <action type="change_directory">local-lib-1.008009</action>
14 <!-- TODO: Here we need to use the new installed perl binary --> 21 <!-- TODO: Here we need to use the new installed perl binary -->
15 <action type="shell_command">export PATH=$INSTALL_DIR/bin/:$PATH; perl Makefile.PL --bootstrap=$INSTALL_DIR/local-lib/ --no-manpages</action> 22 <!-- Test whether $TMP_WORK_DIR exists (introduced in galaxy release 15.07).
23 If not, fall back to using mktemp. Should be set to HOME=$TEMP_WORK_DIR in the future. -->
24 <action type="shell_command">if [ -d "$TMP_WORK_DIR" ] ; then export HOME=$TMP_WORK_DIR ; else export HOME=`mktemp -d` ; fi ; export PATH=$INSTALL_DIR/bin/:$PATH; perl Makefile.PL --bootstrap=$INSTALL_DIR/local-lib/ --no-manpages</action>
16 <action type="shell_command">make install</action> 25 <action type="shell_command">make install</action>
17 <action type="shell_command">export PATH=$INSTALL_DIR/bin/:$PATH; eval $(perl -I$INSTALL_DIR/local-lib/perl5 -Mlocal::lib=$INSTALL_DIR/local-lib)</action> 26 <action type="shell_command">export PATH=$INSTALL_DIR/bin/:$PATH; eval $(perl -I$INSTALL_DIR/local-lib/lib/perl5 -Mlocal::lib=$INSTALL_DIR/local-lib)</action>
18 <action type="change_directory">..</action> 27 <action type="change_directory">..</action>
19 <!-- install cpanminus into our new perl environment --> 28 <!-- install cpanminus into our new perl environment -->
20 <action type="download_file">https://raw.github.com/miyagawa/cpanminus/c0c88f71118ecec334d62ba280e883933e7a6d39/cpanm</action> 29 <action sha256sum="0b67f5c721259d4185bacdcbc87b835821246fe8ac7ad980d3b1a18ecdd10ff6" type="download_file">
21 <!-- prepanding means that the new install perl binary will be used after the pipe --> 30 https://raw.github.com/miyagawa/cpanminus/c0c88f71118ecec334d62ba280e883933e7a6d39/cpanm
22 <action type="shell_command">export PERL5LIB=$INSTALL_DIR/lib/perl5/:$PERL5LIB ; export PATH=$INSTALL_DIR/bin/:$PATH ; cat cpanm | perl - App::cpanminus</action> 31 </action>
23 <action type="shell_command">sed -i -e 's|#!$INSTALL_DIR/bin/|#!/usr/bin/env |' $INSTALL_DIR/bin/*</action> 32 <!-- prepending means that the new install perl binary will be used after the pipe -->
24 33 <action type="shell_command">if [ -d "$TMP_WORK_DIR" ] ; then export HOME=$TMP_WORK_DIR ; else export HOME=`mktemp -d` ; fi ; unset PERL_MB_OPT PERL_MM_OPT ; export PERL5LIB=$INSTALL_DIR/lib/perl5/:$PERL5LIB ; export PATH=$INSTALL_DIR/bin/:$PATH ; cat cpanm | perl - App::cpanminus</action>
34 <action type="shell_command">LC_ALL=C sed -i.bak -e 's|#!$INSTALL_DIR/bin/|#!/usr/bin/env |' $INSTALL_DIR/bin/*</action>
25 <action type="set_environment"> 35 <action type="set_environment">
26 <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> 36 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
27 <environment_variable name="PERL5LIB" action="prepend_to">$INSTALL_DIR/lib/perl5</environment_variable> 37 <environment_variable action="prepend_to" name="PERL5LIB">$INSTALL_DIR/lib/perl5</environment_variable>
28 <environment_variable name="PERL_ROOT_DIR" action="set_to">$INSTALL_DIR</environment_variable> 38 <environment_variable action="set_to" name="PERL_ROOT_DIR">$INSTALL_DIR</environment_variable>
29 <environment_variable name="PERL_LOCALLIB_DIR" action="set_to">$INSTALL_DIR/local-lib</environment_variable> 39 <environment_variable action="set_to" name="PERL_LOCALLIB_DIR">$INSTALL_DIR/local-lib</environment_variable>
30 </action> 40 </action>
31 </actions> 41 </actions>
32 </install> 42 </install>
33 <readme> 43 <readme>
34 Perl 5 is a highly capable, feature-rich programming language with over 25 years of development. 44 Perl 5 is a highly capable, feature-rich programming language with over 25 years of development.
35 http://www.perl.org/ 45 https://www.perl.org/
36 46
37 This repository contains local-lib and cpanm in addition. 47 This repository contains local-lib and cpanm in addition.
38 It is recommended to use something like "cpanm --local-lib=$PERL_ROOT_DIR XML::Parser" to install additional perl modules. 48 It is recommended to use something like "cpanm --local-lib=$PERL_ROOT_DIR XML::Parser" to install additional perl modules.
39 </readme> 49 </readme>
40 </package> 50 </package>