# HG changeset patch
# User iuc
# Date 1431888380 14400
# Node ID 287f4e1318e550d5a9bf67c904f4e3a53627a830
# Parent  266529386609daeb1eca2fd4b01821844a68955d
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_numpy_1_9 commit 5a986267144da2093f820e1833325fd3d5902c7d

diff -r 266529386609 -r 287f4e1318e5 tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Feb 11 12:02:29 2015 -0500
+++ b/tool_dependencies.xml	Sun May 17 14:46:20 2015 -0400
@@ -1,28 +1,33 @@
 <?xml version="1.0"?>
 <tool_dependency>
-        <package name="atlas" version="3.10.2">
-            <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-        </package>
+    <package name="atlas" version="3.10.2">
+        <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7">
+        <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
         <package name="numpy" version="1.9">
             <install version="1.0">
                 <actions>
-                    <action type="download_by_url">https://pypi.python.org/packages/source/n/numpy/numpy-1.9.0.tar.gz#md5=510cee1c6a131e0a9eb759aa2cc62609</action>
-                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
                     <action type="set_environment_for_install">
                         <repository changeset_revision="d5b1c7875b7b" name="package_atlas_3_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                             <package name="atlas" version="3.10.2" />
                         </repository>
                     </action>
-                    <action type="shell_command">
-                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
-                        export ATLAS=$ATLAS_ROOT_PATH &amp;&amp;
-                        python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                    <action type="setup_python_environment">
+                       <repository changeset_revision="3f2a853e2ef5" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                           <package name="python" version="2.7" />
+                       </repository>
+                        <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+                        <package>https://pypi.python.org/packages/source/n/numpy/numpy-1.9.1.tar.gz</package>
                     </action>
                     <action type="set_environment">
                         <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                         <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
                         <environment_variable action="set_to" name="PYTHONPATH_NUMPY">$INSTALL_DIR/lib/python</environment_variable>
                         <environment_variable action="set_to" name="PATH_NUMPY">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="NUMPY_ROOT_DIR">$INSTALL_DIR</environment_variable>
                     </action>
                 </actions>
             </install>