# HG changeset patch
# User iuc
# Date 1444381086 14400
# Node ID 083d3b13ac76004a56b120cafece8b5b781d9488
# Parent  ea89a0385cbc764fc4d4a2afba2e7a6a9ec7ccfd
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_networkx_1_9 commit e6f0b88b7a59f0a10827fd55436b137b13cd1921

diff -r ea89a0385cbc -r 083d3b13ac76 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Sep 17 16:14:50 2015 -0400
+++ b/tool_dependencies.xml	Fri Oct 09 04:58:06 2015 -0400
@@ -1,31 +1,25 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="python" version="2.7">
-        <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
-    </package>
-    <package name="networkx" version="1.9">
-        <install version="1.0">
-            <actions>
-                <action type="setup_python_environment">
-                   <repository changeset_revision="08162f8bc496" name="package_python_2_7_10" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
-                       <package name="python" version="2.7.10" />
-                   </repository>
-                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
-                    <package>https://pypi.python.org/packages/source/n/networkx/networkx-1.9.1.tar.gz</package>
-                </action>
-
-                <action type="set_environment">
-                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
-                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable action="set_to" name="PYTHONPATH_NETWORKX">$INSTALL_DIR</environment_variable>
-                    <environment_variable action="set_to" name="PATH_NETWORKX">$INSTALL_DIR/bin</environment_variable>
-                    <environment_variable action="set_to" name="NETWORKX_ROOT_DIR">$INSTALL_DIR</environment_variable>
-                </action>
-            </actions>
-        </install>
-        <readme>
-            The PYTHONPATH for networkx can be accessed through PYTHONPATH_NETWORKX and the binaries with PATH_NETWORKX.
-            http://networkx.github.io/
-        </readme>
-    </package>
+        <package name="networkx" version="1.9">
+            <install version="1.0">
+                <actions>
+                    <action type="download_by_url">https://pypi.python.org/packages/source/n/networkx/networkx-1.9.1.tar.gz#md5#a2d9ee8427c5636426f319968e0af9f2</action>
+                    <action type="make_directory">$INSTALL_DIR/lib/python</action>
+                    <action type="shell_command">
+                        export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
+                        python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin
+                    </action>
+                    <action type="set_environment">
+                        <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
+                        <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
+                        <environment_variable action="set_to" name="PYTHONPATH_NETWORKX">$INSTALL_DIR/lib/python</environment_variable>
+                        <environment_variable action="set_to" name="PATH_NETWORKX">$INSTALL_DIR/bin</environment_variable>
+                    </action>
+                </actions>
+            </install>
+            <readme>
+                The PYTHONPATH for networkx can be accessed through PYTHONPATH_NETWORKX and the binaries with PATH_NETWORKX.
+                http://networkx.github.io/
+            </readme>
+        </package>
 </tool_dependency>