view tool_dependencies.xml @ 0:4cc9f2bf0ee8 draft

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<?xml version="1.0"?>
<tool_dependency>
    <package name="numpy" version="1.9">
       <repository changeset_revision="dd91d64330d4" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="scipy" version="0.14">
       <repository changeset_revision="a257ce4d82ad" name="package_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <!--package name="rpy2" version="2.3.6">
       <repository name="package_rpy2_2_3_6" owner="bgruening" prior_installation_required="True" />
    </package-->
    <package name="python" version="2.7">
        <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
    </package>
    <package name="msproteomicstools" version="0.3.2">
        <install version="1.0">
            <actions>
                <!-- populate the environment variables from the dependend repos -->
                <action type="set_environment_for_install">
                   <repository changeset_revision="21afd61aae1e" name="package_pandas_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="pandas" version="0.14" />
                    </repository>
                    <repository changeset_revision="dd91d64330d4" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="numpy" version="1.9" />
                    </repository>
                    <!--repository name="package_rpy2_2_3_6" owner="bgruening">
                        <package name="rpy2" version="2.3.6" />
                    </repository>-->
                    <repository changeset_revision="a257ce4d82ad" name="package_scipy_0_14" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                        <package name="scipy" version="0.14" />
                    </repository>
                </action>
                <action type="setup_python_environment">
                   <repository changeset_revision="2c52c900e56a" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                       <package name="python" version="2.7" />
                   </repository>
                    <!-- allow downloading and installing an Python package from https://pypi.org/ -->
                    <package>https://pypi.python.org/packages/source/l/lxml/lxml-3.4.1.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/x/xlwt/xlwt-0.7.5.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/X/XlsxWriter/XlsxWriter-0.6.6.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/s/scikits.datasmooth/scikits.datasmooth-0.61.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/p/pyteomics/pyteomics-2.5.5.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/c/cluster/cluster-1.2.2.tar.gz</package>
                    <package>https://pypi.python.org/packages/source/m/msproteomicstools/msproteomicstools-0.3.2.tar.gz</package>
                </action>
                <action type="set_environment">
                    <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
                    <environment_variable action="prepend_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
                    <environment_variable action="prepend_to" name="PATH">$ENV[PATH_NUMPY]</environment_variable>
                    <environment_variable action="set_to" name="MSPROTEOMICSTOOLS_ROOT">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>Installing msproteomicstools.</readme>
    </package>
</tool_dependency>