# HG changeset patch
# User iuc
# Date 1444382602 14400
# Node ID ba0bc7c7954ebb00ec1e1cd62df2968c87a18963
# Parent  827847c48138635ab9eeef5ba5e4e8f6d36387cc
planemo upload commit e6f0b88b7a59f0a10827fd55436b137b13cd1921

diff -r 827847c48138 -r ba0bc7c7954e tool_dependencies.xml
--- a/tool_dependencies.xml	Wed Apr 29 22:43:45 2015 -0400
+++ b/tool_dependencies.xml	Fri Oct 09 05:23:22 2015 -0400
@@ -10,35 +10,35 @@
                     <repository changeset_revision="41f43a2064ba" name="package_r_3_1_2" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="3.1.2" />
                     </repository>
-                    <package>http://cran.fhcrc.org/src/contrib/VGAM_0.9-6.tar.gz</package>
-                    <package>http://bioconductor.org/packages/3.0/data/experiment/src/contrib/HSMMSingleCell_1.0.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/3.0/bioc/src/contrib/BiocGenerics_0.12.1.tar.gz</package>
-                    <package>http://bioconductor.org/packages/3.0/bioc/src/contrib/Biobase_2.26.0.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/Rcpp_0.11.4.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/plyr_1.8.1.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/digest_0.6.8.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/gtable_0.1.2.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/stringr_0.6.2.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/reshape2_1.4.1.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/dichromat_2.0-0.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/colorspace_1.2-4.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/munsell_0.4.2.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/labeling_0.3.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/scales_0.2.4.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/proto_0.3-10.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/MASS_7.3-39.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/ggplot2_1.0.0.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/lattice_0.20-30.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/Matrix_1.1-5.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/igraph_0.7.1.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/cluster_2.0.1.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/combinat_0.0-8.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/fastICA_1.2-0.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/irlba_1.0.3.tar.gz</package>
-                    <package>http://cran.fhcrc.org/src/contrib/matrixStats_0.14.0.tar.gz</package>
-                    <package>http://bioconductor.org/packages/3.0/bioc/src/contrib/limma_3.22.4.tar.gz</package>
-                    <package>http://bioconductor.org/packages/3.0/bioc/src/contrib/monocle_1.0.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/VGAM_0.9-6.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/HSMMSingleCell_1.0.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/BiocGenerics_0.12.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/Biobase_2.26.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/Rcpp_0.11.4.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/plyr_1.8.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/digest_0.6.8.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/gtable_0.1.2.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/stringr_0.6.2.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/reshape2_1.4.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/RColorBrewer_1.1-2.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/dichromat_2.0-0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/colorspace_1.2-4.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/munsell_0.4.2.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/labeling_0.3.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/scales_0.2.4.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/proto_0.3-10.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/MASS_7.3-39.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/ggplot2_1.0.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/lattice_0.20-30.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/Matrix_1.1-5.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/igraph_0.7.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/cluster_2.0.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/combinat_0.0-8.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/fastICA_1.2-0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/irlba_1.0.3.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/matrixStats_0.14.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/limma_3.22.4.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/monocle/monocle_1.0.0.tar.gz</package>
                 </action>
             </actions>
         </install>