Mercurial > repos > iuc > package_lapack_3_4

changeset 4:ad6c1415507a draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_lapack_3_4 commit 4e829bc62e1328b12abf9d43112967296dcfed7a
author iuc
date Thu, 16 Jun 2016 12:15:43 -0400
parents b5caa0c1be7b
children
files tool_dependencies.xml
diffstat 1 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/tool_dependencies.xml	Tue Dec 22 19:21:11 2015 -0500
+++ b/tool_dependencies.xml	Thu Jun 16 12:15:43 2016 -0400
@@ -3,29 +3,32 @@
     <package name="cmake" version="3.2.3">
         <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
-    
     <package name="lapack" version="3.4.2">
         <install version="1.0">
             <actions>
-                <action sha256sum="60a65daaf16ec315034675942618a2230521ea7adf85eea788ee54841072faf0" type="download_by_url">http://www.netlib.org/lapack/lapack-3.4.2.tgz</action>
-                
+                <action sha256sum="60a65daaf16ec315034675942618a2230521ea7adf85eea788ee54841072faf0" type="download_by_url">https://depot.galaxyproject.org/software/lapack/lapack_3.4.2_src_all.tar.gz</action>
+
                 <action type="set_environment_for_install">
                     <repository changeset_revision="2da7b99cb1a1" name="package_cmake_3_2_3" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="cmake" version="3.2.3" />
                     </repository>
                 </action>
 
+                <!-- compile both static and shared library -->
                 <action type="shell_command">
                     mkdir build &amp;&amp;
                     cd build &amp;&amp;
                     cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DCMAKE_Fortran_FLAGS='-O2 -fPIC' &amp;&amp;
-                    
+                    make &amp;&amp;
+                    make install &amp;&amp;
+                    cmake .. -DCMAKE_INSTALL_PREFIX=$INSTALL_DIR/lapack -DBUILD_SHARED_LIBS=ON -DCMAKE_Fortran_FLAGS='-O2 -fPIC' &amp;&amp;
                     make &amp;&amp;
                     make install
                     </action>
-
                 <action type="set_environment">
                     <environment_variable action="set_to" name="LAPACK_LIB_DIR">$INSTALL_DIR/lapack/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LIBRARY_PATH">$INSTALL_DIR/lapack/lib</environment_variable>
+                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$INSTALL_DIR/lapack/lib</environment_variable>
                 </action>
             </actions>
         </install>