# HG changeset patch
# User iuc
# Date 1415903443 18000
# Node ID d26ff491362075407ae747401fe092f35a6e0640
# Parent  2373c70fa09739d7103e5c22c60f723ddbc84dae
Uploaded

diff -r 2373c70fa097 -r d26ff4913620 tool_dependencies.xml
--- a/tool_dependencies.xml	Thu Nov 13 12:40:51 2014 -0500
+++ b/tool_dependencies.xml	Thu Nov 13 13:30:43 2014 -0500
@@ -11,13 +11,21 @@
                     <repository changeset_revision="a6cc7706ea14" name="package_r_3_1_0" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
                         <package name="R" version="3.1.0" />
                     </repository>
-
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_2_10/getopt_1.20.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_2_10/BiocGenerics_0.8.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/GenomicRanges_1.18.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Rcpp_0.11.3.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RcppArmadillo_0.4.500.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/IRanges_2.0.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/XVector_0.6.0.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/S4Vectors_0.4.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/base64enc_0.1-2.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/colorspace_1.2-4.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/iterators_1.0.7.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/brew_1.0-6.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/checkmate_1.5.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/DBI_0.3.1.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/BBmisc_1.8.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/fail_1.2.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RSQLite_1.0.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/sendmailR_1.2-1.tar.gz</package>
@@ -28,15 +36,15 @@
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/munsell_0.4.2.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/labeling_0.3.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/GenomeInfoDb_1.2.2.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/XVector_0.6.0.tar.gz</package>
+
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/foreach_1.4.2.tar.gz</package>
+                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/digest_0.6.4.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/BatchJobs_1.5.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/BBmisc_1.8.tar.gz</package>
+                        <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_2_10/Biobase_2.22.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/AnnotationDbi_1.28.1.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/annotate_1.44.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RColorBrewer_1.0-5.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/plyr_1.8.1.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/digest_0.6.4.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gtable_0.1.2.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/reshape2_1.4.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/scales_0.2.4.tar.gz</package>
@@ -44,11 +52,6 @@
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Formula_1.1-2.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/latticeExtra_0.6-26.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/acepack_1.3-3.3.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/S4Vectors_0.4.0.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/IRanges_2.0.0.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/GenomicRanges_1.18.1.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Rcpp_0.11.3.tar.gz</package>
-                    <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/RcppArmadillo_0.4.500.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/BiocParallel_1.0.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/genefilter_1.48.1.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/locfit_1.5-9.1.tar.gz</package>
@@ -56,6 +59,11 @@
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/ggplot2_1.0.0.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/Hmisc_3.14-5.tar.gz</package>
                     <package>https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/DESeq2_1.6.1.tar.gz</package>
+
+
+
+
+
                 </action>
             </actions>
         </install>