comparison tool_dependencies.xml @ 4:1b719f0b0790 draft

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author iuc
date Wed, 18 Feb 2015 11:33:58 -0500
parents 5457e32b427c
children 737a2836d00f
comparison
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3:5457e32b427c 4:1b719f0b0790
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool_dependency> 2 <tool_dependency>
3 <package name="numpy" version="1.7.1"> 3 <package name="numpy" version="1.7.1">
4 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" /> 4 <repository changeset_revision="6a7842f2f960" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
5 </package> 5 </package>
6 <package name="bx-python" version="12-2013"> 6 <package name="bx-python" version="12-2013">
7 <install version="1.0"> 7 <install version="1.0">
8 <actions> 8 <actions>
9 <action type="shell_command">hg clone -r ac9fa7a479f269421edc1b0e4f1c2431981b0cf5 https://bitbucket.org/james_taylor/bx-python</action> 9 <action type="shell_command">hg clone -r ac9fa7a479f269421edc1b0e4f1c2431981b0cf5 https://bitbucket.org/james_taylor/bx-python</action>
10 10
11 <action type="set_environment_for_install"> 11 <action type="set_environment_for_install">
12 <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu"> 12 <repository changeset_revision="6a7842f2f960" name="package_numpy_1_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
13 <package name="numpy" version="1.7.1" /> 13 <package name="numpy" version="1.7.1" />
14 </repository> 14 </repository>
15 </action> 15 </action>
16 16
17 <action type="make_directory">$INSTALL_DIR/lib/python</action> 17 <action type="make_directory">$INSTALL_DIR/lib/python</action>
18 <action type="shell_command"> 18 <action type="shell_command">
19 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 19 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp;
20 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action> 20 python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
21 <action type="set_environment"> 21 <action type="set_environment">
22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> 22 <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> 23 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>
24 <environment_variable action="set_to" name="BX_PYTHON_PATH">$INSTALL_DIR</environment_variable> 24 <environment_variable action="set_to" name="BX_PYTHON_PATH">$INSTALL_DIR</environment_variable>