# HG changeset patch
# User iuc
# Date 1421966085 18000
# Node ID 411b6d0c27dc6a26723b14ccc55172a768c1f4af
# Parent  97ca7e738c022c78fc8d5bf34620a3973a1230f6
Uploaded

diff -r 97ca7e738c02 -r 411b6d0c27dc tool_dependencies.xml
--- a/tool_dependencies.xml	Sat Dec 14 15:09:32 2013 -0500
+++ b/tool_dependencies.xml	Thu Jan 22 17:34:45 2015 -0500
@@ -1,23 +1,26 @@
 <?xml version="1.0"?>
 <tool_dependency>
-    <package name="numpy" version="1.7.1">
-        <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" prior_installation_required="True" toolshed="http://testtoolshed.g2.bx.psu.edu" />
+    <package name="numpy" version="1.9">
+        <repository changeset_revision="49a8bba001d7" name="package_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
+    </package>
+    <package name="python" version="2.7">
+        <repository changeset_revision="dffe84445ebd" name="package_python_2_7" owner="iuc" prior_installation_required="True" toolshed="https://testtoolshed.g2.bx.psu.edu" />
     </package>
     <package name="bx-python" version="0.7.1">
         <install version="1.0">
             <actions>
-                <action type="download_by_url">https://pypi.python.org/packages/source/b/bx-python/bx-python-0.7.1.tar.gz</action>
-
                 <action type="set_environment_for_install">
-                    <repository changeset_revision="84125ffacb90" name="package_numpy_1_7" owner="iuc" toolshed="http://testtoolshed.g2.bx.psu.edu">
-                        <package name="numpy" version="1.7.1" />
+                    <repository changeset_revision="49a8bba001d7" name="package_numpy_1_9" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                        <package name="numpy" version="1.9" />
                     </repository>
                 </action>
-
-                <action type="make_directory">$INSTALL_DIR/lib/python</action>
-                <action type="shell_command">
-                    export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python &amp;&amp; 
-                    python setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin</action>
+                    <action type="setup_python_environment">
+                       <repository changeset_revision="dffe84445ebd" name="package_python_2_7" owner="iuc" toolshed="https://testtoolshed.g2.bx.psu.edu">
+                           <package name="python" version="2.7" />
+                       </repository>
+                        <!-- allow downloading and installing an Python package from https://pypi.org/ -->
+                        <package>https://pypi.python.org/packages/source/b/bx-python/bx-python-0.7.1.tar.gz</package>
+                    </action>
                 <action type="set_environment">
                     <environment_variable action="prepend_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
                     <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable>