diff macros.xml @ 20:35d32c807c23 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/ncbi_datasets commit 5a65a62588a36d757f96681bf72f537c12c91beb
author iuc
date Fri, 26 Dec 2025 17:16:51 +0000
parents ced734560c9d
children
line wrap: on
line diff
--- a/macros.xml	Mon Mar 17 11:05:34 2025 +0000
+++ b/macros.xml	Fri Dec 26 17:16:51 2025 +0000
@@ -1,5 +1,5 @@
 <macros>
-    <token name="@TOOL_VERSION@">17.1.0</token>
+    <token name="@TOOL_VERSION@">18.13.0</token>
     <token name="@VERSION_SUFFIX@">0</token>
     <token name="@PROFILE@">23.0</token>
     <token name="@LICENSE@">MIT</token>
@@ -11,8 +11,9 @@
     <xml name="requirements">
         <requirements>
             <requirement type="package" version="@TOOL_VERSION@">ncbi-datasets-cli</requirement>
-            <requirement type="package" version="2025.1.31">ca-certificates</requirement>
-            <requirement type="package" version="6.0">unzip</requirement>
+            <requirement type="package" version="2025.8.3">ca-certificates</requirement>
+             <!-- Removed line below because it was causing "skipping: [..] need PK compat. v4.5 (can do v2.1)"  -->
+             <!-- <requirement type="package" version="6.0">unzip</requirement> -->
         </requirements>
     </xml>
     <xml name="bio_tools">
@@ -94,7 +95,7 @@
     <xml name="genome_includes">
         <option value="genome" selected="true">genomic sequence (genome)</option>
         <option value="rna">transcript (rna)</option>
-        <option value="protein">amnio acid sequences (protein)</option>
+        <option value="protein">amino acid sequences (protein)</option>
         <option value="cds">nucleotide coding sequences (cds)</option>
         <option value="gff3">general feature file (gff3)</option>
         <option value="gtf">gene transfer format (gtf)</option>
@@ -104,7 +105,7 @@
     </xml>
     <xml name="gene_includes">
         <option value="gene">gene sequence (gene)</option>
-        <option value="protein" selected="true">amnio acid sequences (protein)</option>
+        <option value="protein" selected="true">amino acid sequences (protein)</option>
         <yield/>
     </xml>
 
@@ -401,11 +402,8 @@
     </xml>
     <xml name="citations">
         <citations>
-            <citation type="bibtex">@misc{NCBI,
-                author = "{NCBI}",
-                title = "NCBI Datasets",
-                year = "2022",
-                url = "https://github.com/ncbi/datasets"}
+            <citation type="doi">
+                10.1038/s41597-024-03571-y
             </citation>
         </citations>
     </xml>