Mercurial > repos > iuc > multiqc
diff test-data/bbduk.txt @ 27:b7e8663db1ec draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 327834d2ea9b16f0f0264fa4e9b675a2277f2fee
| author | iuc |
|---|---|
| date | Tue, 18 Feb 2025 23:17:45 +0000 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/bbduk.txt Tue Feb 18 23:17:45 2025 +0000 @@ -0,0 +1,26 @@ +Executing jgi.BBDuk [in=forward.fastq.gz, out=/data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat, ref=dataset_5c3ad7b3-f75c-4f5a-a70e-15ae843bc97c.dat.fa, k=27, rcomp=t, maskmiddle=t, minkmerhits=1, minkmerfraction=0.0, mincovfraction=0.0, hammingdistance=0, qhdist=0, editdistance=0, forbidn=f, trimfailures=f, findbestmatch=f, skipr1=f, skipr2=f, t=1] +Version 39.08 + +Set threads to 1 +Changed from ASCII-33 to ASCII-64 on input quality B (Q33) for base N at lines 1 and 3, position 0 while prescanning. +Unspecified format for output /data/jwd05e/main/079/061/79061727/outputs/dataset_1abda394-9c76-4c97-9712-e52be8f79694.dat; defaulting to fastq. +0.398 seconds. +Initial: +Memory: max=3672m, total=270m, free=243m, used=27m + +Added 2970 kmers; time: 0.549 seconds. +Memory: max=3672m, total=270m, free=238m, used=32m + +Input is being processed as unpaired +Changed from ASCII-33 to ASCII-64 on input ;: 59 -> 28 +Started output streams: 0.052 seconds. +Processing time: 0.106 seconds. + +Input: 100 reads 10000 bases. +Contaminants: 0 reads (0.00%) 0 bases (0.00%) +Total Removed: 0 reads (0.00%) 0 bases (0.00%) +Result: 100 reads (100.00%) 10000 bases (100.00%) + +Time: 0.711 seconds. +Reads Processed: 100 0.14k reads/sec +Bases Processed: 10000 0.01m bases/sec