comparison macros.xml @ 29:ef6bd40a30d2 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/multiqc commit 4095773348da6faeb6096f58785b66898b09befa

28:e99aaf069191

<macros>
    <token name="@TOOL_VERSION@">1.27</token>
    <token name="@VERSION_SUFFIX@">3</token>
    <xml name="bio_tools">
        <xrefs>
            <xref type="bio.tools">multiqc</xref>
        </xrefs>
    </xml>

            </assert_contents>
        </element>
    </xml>
    <xml name="general_tests">
        <!--Test 01-->
        <test expect_num_outputs="3">
            <repeat name="results">
                <conditional name="software_cond">
                    <param name="software" value="cutadapt"/>
                    <param name="input" value="cutadapt.txt"/>
                </conditional>

            </repeat>
            <param name="title" value="Title of the report"/>
            <param name="comment" value="Commment for the report"/>
            <param name="flat" value="true"/>
            <param name="export" value="true"/>
            <output name="html_report">
                <assert_contents>
                    <has_text text="Title of the report"/>
                    <has_text text="Commment for the report"/>
                    <has_text text="cutadapt_trimmed_sequences_plot"/>

                    <has_n_lines n="11"/>
                    <has_n_columns n="22"/>
                </assert_contents>
            </output>
            <output_collection name="plots" type="list" count="29"/>
        </test>
        <!--Test 02-->
        <test expect_num_outputs="2">
            <repeat name="results">
                <conditional name="software_cond">

                    <has_n_lines n="2" />
                </assert_contents>
            </output-->
        </test>
        <!--Test 05-->
        <test expect_num_outputs="3">
            <repeat name="results">
                <conditional name="software_cond">
                    <param name="software" value="fastqc"/>
                    <repeat name="output">
                        <param name="type" value="data"/>

            </repeat>
            <param name="title" value="Title of the report"/>
            <param name="comment" value="Commment for the report"/>
            <param name="flat" value="true"/>
            <param name="export" value="true"/>
            <output name="html_report">
                <assert_contents>
                    <has_text text="Title of the report"/>
                    <has_text text="Commment for the report"/>
                    <has_text text="fastqc_seq_heatmap_key_t"/>

                    <assert_contents>
                        <has_size size="2877" delta="200"/>
                    </assert_contents>
                </element>
            </output_collection>
        </test>
        <!--Test 06-->
        <test expect_num_outputs="2">
            <repeat name="results">
                <conditional name="software_cond">

29:ef6bd40a30d2

<macros>
    <token name="@TOOL_VERSION@">1.27</token>
    <token name="@VERSION_SUFFIX@">4</token>
    <xml name="bio_tools">
        <xrefs>
            <xref type="bio.tools">multiqc</xref>
        </xrefs>
    </xml>

            </assert_contents>
        </element>
    </xml>
    <xml name="general_tests">
        <!--Test 01-->
        <test expect_num_outputs="4">
            <repeat name="results">
                <conditional name="software_cond">
                    <param name="software" value="cutadapt"/>
                    <param name="input" value="cutadapt.txt"/>
                </conditional>

            </repeat>
            <param name="title" value="Title of the report"/>
            <param name="comment" value="Commment for the report"/>
            <param name="flat" value="true"/>
            <param name="export" value="true"/>
            <param name="png_plots" value="true"/>
            <output name="html_report">
                <assert_contents>
                    <has_text text="Title of the report"/>
                    <has_text text="Commment for the report"/>
                    <has_text text="cutadapt_trimmed_sequences_plot"/>

                    <has_n_lines n="11"/>
                    <has_n_columns n="22"/>
                </assert_contents>
            </output>
            <output_collection name="plots" type="list" count="29"/>
            <output_collection name="png_plot" type="list" count="38"/>
        </test>
        <!--Test 02-->
        <test expect_num_outputs="2">
            <repeat name="results">
                <conditional name="software_cond">

                    <has_n_lines n="2" />
                </assert_contents>
            </output-->
        </test>
        <!--Test 05-->
        <test expect_num_outputs="4">
            <repeat name="results">
                <conditional name="software_cond">
                    <param name="software" value="fastqc"/>
                    <repeat name="output">
                        <param name="type" value="data"/>

            </repeat>
            <param name="title" value="Title of the report"/>
            <param name="comment" value="Commment for the report"/>
            <param name="flat" value="true"/>
            <param name="export" value="true"/>
            <param name="png_plots" value="true"/>
            <output name="html_report">
                <assert_contents>
                    <has_text text="Title of the report"/>
                    <has_text text="Commment for the report"/>
                    <has_text text="fastqc_seq_heatmap_key_t"/>

                    <assert_contents>
                        <has_size size="2877" delta="200"/>
                    </assert_contents>
                </element>
            </output_collection>
            <output_collection name="png_plot" type="list" count="11"/>
            
        </test>
        <!--Test 06-->
        <test expect_num_outputs="2">
            <repeat name="results">
                <conditional name="software_cond">