# HG changeset patch
# User iuc
# Date 1491338995 14400
# Node ID ad506459969c07b09a74bf2b9fa289ae32929db1
# Parent  9c0a848e33b77772570f83ac01ba35fb3aa305e8
Uploaded

diff -r 9c0a848e33b7 -r ad506459969c multigps.xml
--- a/multigps.xml	Tue Apr 04 16:45:56 2017 -0400
+++ b/multigps.xml	Tue Apr 04 16:49:55 2017 -0400
@@ -12,6 +12,7 @@
             mkdir -p $output_dir &&
             multigps
             ## General options
+            --design '$design_file'
             ## Append .txt extensions to events hrefs
             ## in output dataset so files will render
             ## in the browser.
@@ -172,7 +173,7 @@
         #set experiment_type = $control_items['experiment_type']
         #set line = str($control_items) + '\t' + 'Control' + '\t' + str($control.ext.upper()) + '\t' + str($cond_i)
         #set specify_replicate_name_cond = $control_items['specify_replicate_name_cond']
-        #set specify_replicate_name = $specify_replicate_name_cond.specify_replicate_name
+        #set specify_replicate_name = $specify_replicate_name_cond['specify_replicate_name']
         #if str($specify_replicate_name) == 'yes':
             #set line = $line + '\t' + str($specify_replicate_name_cond['replicate_name'])
         #end if