comparison multigps.xml @ 24:d61d1aaf4b07 draft

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23:eb9b1816f00e

inputs_path = sys.argv[1]
params = json.load(open(inputs_path, 'r'))
condition_repeat = params['condition_repeat']
fh = open('design.tabular', 'w')

for cond_i, condition_items in enumerate(condition_repeat):
    fh.write('%s\n' % str(condition_items)
    """
    for signal_items in condition_items['signal_repeat']:
        signal = signal_items['signal']
        replicate_name = signal_items['replicate_name']
        experiment_type = signal['experiment_type']
        line_items = [signal.file_name, 'Signal', signal.ext.upper(), cond_i, replicate_name, experiment_type]

        fixedreadcount_cond = control_items['fixedreadcount_cond']
        fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select']
        if fixedreadcount_select == 'yes':
            line_items.append(fixedreadcount_cond['fixedreadcount'])
        fh.write('%s\n' % '\t'.join(line_items))
    """
fh.close()
]]>
        </configfile>
    </configfiles>
    <inputs>

24:d61d1aaf4b07

inputs_path = sys.argv[1]
params = json.load(open(inputs_path, 'r'))
condition_repeat = params['condition_repeat']
fh = open('design.tabular', 'w')
fh.write('%s\n' % str(params)
"""
for cond_i, condition_items in enumerate(condition_repeat):
    for signal_items in condition_items['signal_repeat']:
        signal = signal_items['signal']
        replicate_name = signal_items['replicate_name']
        experiment_type = signal['experiment_type']
        line_items = [signal.file_name, 'Signal', signal.ext.upper(), cond_i, replicate_name, experiment_type]

        fixedreadcount_cond = control_items['fixedreadcount_cond']
        fixedreadcount_select = fixedreadcount_cond['fixedreadcount_select']
        if fixedreadcount_select == 'yes':
            line_items.append(fixedreadcount_cond['fixedreadcount'])
        fh.write('%s\n' % '\t'.join(line_items))
"""
fh.close()
]]>
        </configfile>
    </configfiles>
    <inputs>