Mercurial > repos > iuc > mothur_unique_seqs
comparison unique.seqs.xml @ 4:a05a8d7ce8dd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 13:36:54 -0400 |
| parents | 84e71b1537f3 |
| children |
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| 3:84e71b1537f3 | 4:a05a8d7ce8dd |
|---|---|
| 31 <param name="names" type="data" format="mothur.names,mothur.count_table" optional="true" label="name file or count table - Sequences Names"/> | 31 <param name="names" type="data" format="mothur.names,mothur.count_table" optional="true" label="name file or count table - Sequences Names"/> |
| 32 <param name="format" type="select" label="output format"> | 32 <param name="format" type="select" label="output format"> |
| 33 <option value="count" selected="true"> Count table </option> | 33 <option value="count" selected="true"> Count table </option> |
| 34 <option value="name"> Name file </option> | 34 <option value="name"> Name file </option> |
| 35 </param> | 35 </param> |
| 36 <expand macro="param-savelog"/> | |
| 36 </inputs> | 37 </inputs> |
| 37 <outputs> | 38 <outputs> |
| 38 <expand macro="logfile-output"/> | 39 <expand macro="logfile-output"/> |
| 39 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.unique.*" label="${tool.name} on ${on_string}: fasta"/> | 40 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.unique.*" label="${tool.name} on ${on_string}: fasta"/> |
| 40 <data name="out_names" format="mothur.names" from_work_dir="fasta*.names" label="${tool.name} on ${on_string}: names"> | 41 <data name="out_names" format="mothur.names" from_work_dir="fasta*.names" label="${tool.name} on ${on_string}: names"> |
| 49 <param name="fasta" value="amazon.fasta"/> | 50 <param name="fasta" value="amazon.fasta"/> |
| 50 <param name="names" value="amazon1.names" ftype="mothur.names"/> | 51 <param name="names" value="amazon1.names" ftype="mothur.names"/> |
| 51 <param name="format" value="name"/> | 52 <param name="format" value="name"/> |
| 52 <output name="out_fasta" file="amazon.unique.fasta" ftype="fasta"/> | 53 <output name="out_fasta" file="amazon.unique.fasta" ftype="fasta"/> |
| 53 <output name="out_names" file="amazon.unique.names" ftype="mothur.names"/> | 54 <output name="out_names" file="amazon.unique.names" ftype="mothur.names"/> |
| 55 <param name="savelog" value="true"/> | |
| 54 <expand macro="logfile-test"/> | 56 <expand macro="logfile-test"/> |
| 55 </test> | 57 </test> |
| 56 <test><!-- test with count file --> | 58 <test><!-- test with count file --> |
| 57 <param name="fasta" value="amazon.unique.fasta"/> | 59 <param name="fasta" value="amazon.unique.fasta"/> |
| 58 <param name="names" value="amazon.count_table" ftype="mothur.count_table"/> | 60 <param name="names" value="amazon.count_table" ftype="mothur.count_table"/> |
| 59 <output name="out_fasta" file="amazon.unique.fasta" ftype="fasta"/> | 61 <output name="out_fasta" file="amazon.unique.fasta" ftype="fasta"/> |
| 60 <output name="out_count" md5="2024cbb895f79346606ab196dd130639" ftype="mothur.count_table"/> | 62 <output name="out_count" md5="2024cbb895f79346606ab196dd130639" ftype="mothur.count_table"/> |
| 63 <param name="savelog" value="true"/> | |
| 61 <expand macro="logfile-test"/> | 64 <expand macro="logfile-test"/> |
| 62 </test> | 65 </test> |
| 63 <test><!-- test wth fasta only --> | 66 <test><!-- test wth fasta only --> |
| 64 <param name="fasta" value="amazon.fasta"/> | 67 <param name="fasta" value="amazon.fasta"/> |
| 65 <param name="format" value="name"/> | 68 <param name="format" value="name"/> |
| 66 <output name="out_fasta" file="amazon.unique.fasta" ftype="fasta"/> | 69 <output name="out_fasta" file="amazon.unique.fasta" ftype="fasta"/> |
| 67 <output name="out_names" file="amazon.unique.names" ftype="mothur.names"/> | 70 <output name="out_names" file="amazon.unique.names" ftype="mothur.names"/> |
| 71 <param name="savelog" value="true"/> | |
| 68 <expand macro="logfile-test"/> | 72 <expand macro="logfile-test"/> |
| 69 </test> | 73 </test> |
| 70 </tests> | 74 </tests> |
| 71 <help><![CDATA[ | 75 <help><![CDATA[ |
| 72 | 76 |