Mercurial > repos > iuc > mothur_phylotype
comparison phylotype.xml @ 5:a9da762b1688 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 14:05:46 -0400 |
| parents | 61846dca0ad1 |
| children |
comparison
equal
deleted
inserted
replaced
| 4:7bea60a287ca | 5:a9da762b1688 |
|---|---|
| 44 <option value="8">8</option> | 44 <option value="8">8</option> |
| 45 <option value="9">9</option> | 45 <option value="9">9</option> |
| 46 <option value="10">10</option> | 46 <option value="10">10</option> |
| 47 </param> | 47 </param> |
| 48 <param name="cutoff" type="integer" value="" min="0" max="50" optional="true" label="cutoff - Truncate the taxonomy at depth (Ignored if < 0)"/> | 48 <param name="cutoff" type="integer" value="" min="0" max="50" optional="true" label="cutoff - Truncate the taxonomy at depth (Ignored if < 0)"/> |
| 49 <expand macro="param-savelog"/> | |
| 49 </inputs> | 50 </inputs> |
| 50 <outputs> | 51 <outputs> |
| 51 <expand macro="logfile-output"/> | 52 <expand macro="logfile-output"/> |
| 52 <data name="rabund" format="mothur.rabund" from_work_dir="taxonomy*.rabund" label="${tool.name} on ${on_string}: rabund (Rank Abundance)"/> | 53 <data name="rabund" format="mothur.rabund" from_work_dir="taxonomy*.rabund" label="${tool.name} on ${on_string}: rabund (Rank Abundance)"/> |
| 53 <data name="sabund" format="mothur.sabund" from_work_dir="taxonomy*.sabund" label="${tool.name} on ${on_string}: sabund (Species Abundance)"/> | 54 <data name="sabund" format="mothur.sabund" from_work_dir="taxonomy*.sabund" label="${tool.name} on ${on_string}: sabund (Species Abundance)"/> |
| 57 <test> | 58 <test> |
| 58 <param name="taxonomy" value="abrecovery.pds.wang.taxonomy" ftype="mothur.seq.taxonomy"/> | 59 <param name="taxonomy" value="abrecovery.pds.wang.taxonomy" ftype="mothur.seq.taxonomy"/> |
| 59 <output name="rabund" md5="689fb6fd2fb4cd0740fc8b62d7e05556" ftype="mothur.rabund"/> | 60 <output name="rabund" md5="689fb6fd2fb4cd0740fc8b62d7e05556" ftype="mothur.rabund"/> |
| 60 <output name="sabund" md5="62547e84f1d051a16937715433f3d78a" ftype="mothur.sabund"/> | 61 <output name="sabund" md5="62547e84f1d051a16937715433f3d78a" ftype="mothur.sabund"/> |
| 61 <output name="otulist" md5="c808112d524863bbc973dd721ba18a06" ftype="mothur.list"/> | 62 <output name="otulist" md5="c808112d524863bbc973dd721ba18a06" ftype="mothur.list"/> |
| 63 <param name="savelog" value="true"/> | |
| 62 <expand macro="logfile-test"/> | 64 <expand macro="logfile-test"/> |
| 63 </test> | 65 </test> |
| 64 <test> | 66 <test> |
| 65 <param name="taxonomy" value="abrecovery.pds.wang.taxonomy" ftype="mothur.seq.taxonomy"/> | 67 <param name="taxonomy" value="abrecovery.pds.wang.taxonomy" ftype="mothur.seq.taxonomy"/> |
| 66 <param name="label" value="1,4,5"/> | 68 <param name="label" value="1,4,5"/> |
| 67 <param name="cutoff" value="5"/> | 69 <param name="cutoff" value="5"/> |
| 68 <output name="rabund" md5="3d2e3821bef6ecd7eaf0ea62e8692154" ftype="mothur.rabund"/> | 70 <output name="rabund" md5="3d2e3821bef6ecd7eaf0ea62e8692154" ftype="mothur.rabund"/> |
| 69 <output name="sabund" md5="582825c475bffbf7e450156ff26c844a" ftype="mothur.sabund"/> | 71 <output name="sabund" md5="582825c475bffbf7e450156ff26c844a" ftype="mothur.sabund"/> |
| 70 <output name="otulist" md5="424a2c62df2e37b32542731b9631f8ed" ftype="mothur.list"/> | 72 <output name="otulist" md5="424a2c62df2e37b32542731b9631f8ed" ftype="mothur.list"/> |
| 73 <param name="savelog" value="true"/> | |
| 71 <expand macro="logfile-test"/> | 74 <expand macro="logfile-test"/> |
| 72 </test> | 75 </test> |
| 73 </tests> | 76 </tests> |
| 74 <help><![CDATA[ | 77 <help><![CDATA[ |
| 75 | 78 |