Mercurial > repos > iuc > mothur_parse_list
comparison parse.list.xml @ 5:1f3a245edf62 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 14:17:44 -0400 |
| parents | fe05fc98c62a |
| children |
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| 4:fcc41e597e93 | 5:1f3a245edf62 |
|---|---|
| 33 <param name="group" type="data" format="mothur.groups" label="group - Sequences Name reference"/> | 33 <param name="group" type="data" format="mothur.groups" label="group - Sequences Name reference"/> |
| 34 <param name="label" type="select" optional="true" multiple="true" label="label - To filter: Select OTU Labels to include"> | 34 <param name="label" type="select" optional="true" multiple="true" label="label - To filter: Select OTU Labels to include"> |
| 35 <expand macro="labeloptions"/> | 35 <expand macro="labeloptions"/> |
| 36 </param> | 36 </param> |
| 37 <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="generated by count.seqs"/> | 37 <param name="count" type="data" format="mothur.count_table" optional="true" label="count - a count_table" help="generated by count.seqs"/> |
| 38 <expand macro="param-savelog"/> | |
| 38 </inputs> | 39 </inputs> |
| 39 <outputs> | 40 <outputs> |
| 40 <expand macro="logfile-output"/> | 41 <expand macro="logfile-output"/> |
| 41 <collection name="listfiles" type="list" label="${tool.name} on ${on_string}: listfiles per group and label"> | 42 <collection name="listfiles" type="list" label="${tool.name} on ${on_string}: listfiles per group and label"> |
| 42 <discover_datasets pattern=".*?\.(?P<designation>.*)\.list" format="mothur.list"/> | 43 <discover_datasets pattern=".*?\.(?P<designation>.*)\.list" format="mothur.list"/> |
| 47 <param name="otu" value="amazon.an.list"/> | 48 <param name="otu" value="amazon.an.list"/> |
| 48 <param name="group" value="amazon.groups"/> | 49 <param name="group" value="amazon.groups"/> |
| 49 <output_collection name="listfiles" count="72"> | 50 <output_collection name="listfiles" count="72"> |
| 50 <element name="pasture.0.21" md5="5c803fd0f0e1de69c51048e02bc02e65" ftype="mothur.list"/> | 51 <element name="pasture.0.21" md5="5c803fd0f0e1de69c51048e02bc02e65" ftype="mothur.list"/> |
| 51 </output_collection> | 52 </output_collection> |
| 53 <param name="savelog" value="true"/> | |
| 52 <expand macro="logfile-test"/> | 54 <expand macro="logfile-test"/> |
| 53 </test> | 55 </test> |
| 54 <test> | 56 <test> |
| 55 <param name="otu" value="amazon.an.list"/> | 57 <param name="otu" value="amazon.an.list"/> |
| 56 <param name="group" value="amazon.groups" ftype="mothur.groups"/> | 58 <param name="group" value="amazon.groups" ftype="mothur.groups"/> |
| 57 <param name="label" value="0.03,0.05"/> | 59 <param name="label" value="0.03,0.05"/> |
| 58 <output_collection name="listfiles" count="4"/> | 60 <output_collection name="listfiles" count="4"/> |
| 61 <param name="savelog" value="true"/> | |
| 59 <expand macro="logfile-test"/> | 62 <expand macro="logfile-test"/> |
| 60 </test> | 63 </test> |
| 61 </tests> | 64 </tests> |
| 62 <help><![CDATA[ | 65 <help><![CDATA[ |
| 63 | 66 |