Mercurial > repos > iuc > mothur_normalize_shared
comparison normalize.shared.xml @ 4:ad0676e23ef5 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 13:45:40 -0400 |
| parents | 6ce70e21be87 |
| children |
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| 3:6ce70e21be87 | 4:ad0676e23ef5 |
|---|---|
| 46 <param name="method" type="select" label="method - Normalization method"> | 46 <param name="method" type="select" label="method - Normalization method"> |
| 47 <option value="totalgroup" selected="true">Total Group</option> | 47 <option value="totalgroup" selected="true">Total Group</option> |
| 48 <option value="zscore">Z Score</option> | 48 <option value="zscore">Z Score</option> |
| 49 </param> | 49 </param> |
| 50 <param name="makerelabund" type="boolean" truevalue="true" falsevalue="false" checked="false" label="makerelabund - convert a shared file to a relabund file before you normalize"/> | 50 <param name="makerelabund" type="boolean" truevalue="true" falsevalue="false" checked="false" label="makerelabund - convert a shared file to a relabund file before you normalize"/> |
| 51 <expand macro="param-savelog"/> | |
| 51 </inputs> | 52 </inputs> |
| 52 <outputs> | 53 <outputs> |
| 53 <expand macro="logfile-output"/> | 54 <expand macro="logfile-output"/> |
| 54 <collection name="sharedfiles" type="list" label="${tool.name} on ${on_string}: norm.shared files collection"> | 55 <collection name="sharedfiles" type="list" label="${tool.name} on ${on_string}: norm.shared files collection"> |
| 55 <discover_datasets pattern=".*?\.(?P<designation>.*)\.shared" format="mothur.shared"/> | 56 <discover_datasets pattern=".*?\.(?P<designation>.*)\.shared" format="mothur.shared"/> |
| 59 <test><!-- test default settings --> | 60 <test><!-- test default settings --> |
| 60 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> | 61 <param name="otu" value="amazon.an.shared" ftype="mothur.shared"/> |
| 61 <output_collection name="sharedfiles" count="36"> | 62 <output_collection name="sharedfiles" count="36"> |
| 62 <element name="0.26.norm" md5="73ad51ce74e5b3efbc1d9ec8ed6e1c07" ftype="mothur.shared"/> | 63 <element name="0.26.norm" md5="73ad51ce74e5b3efbc1d9ec8ed6e1c07" ftype="mothur.shared"/> |
| 63 </output_collection> | 64 </output_collection> |
| 65 <param name="savelog" value="true"/> | |
| 64 <expand macro="logfile-test"/> | 66 <expand macro="logfile-test"/> |
| 65 </test> | 67 </test> |
| 66 <test><!-- test default settings --> | 68 <test><!-- test default settings --> |
| 67 <param name="otu" value="amazon.an.relabund" ftype="mothur.relabund"/> | 69 <param name="otu" value="amazon.an.relabund" ftype="mothur.relabund"/> |
| 68 <param name="label" value="0.03,0.05,0.22,0.26"/> | 70 <param name="label" value="0.03,0.05,0.22,0.26"/> |
| 69 <param name="groups" value="forest,pasture"/> | 71 <param name="groups" value="forest,pasture"/> |
| 70 <param name="method" value="zscore"/> | 72 <param name="method" value="zscore"/> |
| 71 <output_collection name="sharedfiles" count="4"> | 73 <output_collection name="sharedfiles" count="4"> |
| 72 <element name="0.26.norm" md5="1204d65c732fd880585180e956610026" ftype="mothur.shared"/> | 74 <element name="0.26.norm" md5="1204d65c732fd880585180e956610026" ftype="mothur.shared"/> |
| 73 </output_collection> | 75 </output_collection> |
| 76 <param name="savelog" value="true"/> | |
| 74 <expand macro="logfile-test"/> | 77 <expand macro="logfile-test"/> |
| 75 </test> | 78 </test> |
| 76 </tests> | 79 </tests> |
| 77 <help><![CDATA[ | 80 <help><![CDATA[ |
| 78 | 81 |