Mercurial > repos > iuc > mothur_make_group
comparison make.group.xml @ 4:e1e0c8bb9aa8 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 13:51:51 -0400 |
| parents | 5b28532dfc0a |
| children | 06ddf1f9ffd4 |
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| 3:d9c06064675b | 4:e1e0c8bb9aa8 |
|---|---|
| 50 <param name="fasta" type="data" format="fasta" label="fasta - Fasta to group"/> | 50 <param name="fasta" type="data" format="fasta" label="fasta - Fasta to group"/> |
| 51 <param name="group" type="text" label="group - Group name"/> | 51 <param name="group" type="text" label="group - Group name"/> |
| 52 </repeat> | 52 </repeat> |
| 53 </when> | 53 </when> |
| 54 </conditional> | 54 </conditional> |
| 55 <expand macro="param-savelog"/> | |
| 55 </inputs> | 56 </inputs> |
| 56 <outputs> | 57 <outputs> |
| 57 <expand macro="logfile-output"/> | 58 <expand macro="logfile-output"/> |
| 58 <data name="output" format="mothur.groups" from_work_dir="*groups" label="${tool.name} on ${on_string}: group"/> | 59 <data name="output" format="mothur.groups" from_work_dir="*groups" label="${tool.name} on ${on_string}: group"/> |
| 59 </outputs> | 60 </outputs> |
| 67 <repeat name="inputs"> | 68 <repeat name="inputs"> |
| 68 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head"/> | 69 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head"/> |
| 69 <param name="group" value="testgroup2"/> | 70 <param name="group" value="testgroup2"/> |
| 70 </repeat> | 71 </repeat> |
| 71 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/> | 72 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/> |
| 73 <param name="savelog" value="true"/> | |
| 72 <expand macro="logfile-test"/> | 74 <expand macro="logfile-test"/> |
| 73 </test> | 75 </test> |
| 74 <test> <!-- test auto-creation from collection --> | 76 <test> <!-- test auto-creation from collection --> |
| 75 <param name="how" value="collection"/> | 77 <param name="how" value="collection"/> |
| 76 <param name="fasta_collection"> | 78 <param name="fasta_collection"> |
| 78 <element name="testgroup" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" /> | 80 <element name="testgroup" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" /> |
| 79 <element name="testgroup2" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" /> | 81 <element name="testgroup2" ftype="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head" /> |
| 80 </collection> | 82 </collection> |
| 81 </param> | 83 </param> |
| 82 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/> | 84 <output name="output" file="Mock_S280_L001_R1_001_small.trim.contigs.good.Mock_S280_L001_R1_001_small.trim.contigs.good.groups"/> |
| 83 <expand macro="logfile-test"/> | 85 <param name="savelog" value="true"/> |
| 86 <expand macro="logfile-test"/> | |
| 84 </test> | 87 </test> |
| 85 </tests> | 88 </tests> |
| 86 <help><![CDATA[ | 89 <help><![CDATA[ |
| 87 | 90 |
| 88 @MOTHUR_OVERVIEW@ | 91 @MOTHUR_OVERVIEW@ |