comparison make.design.xml @ 1:840ac4688cf5 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ea40e3d84e7850eb4226d6c85f709dcad18d4ba9

0:78dcf76823de

    <description>Assign groups to Sets</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="version_command"/>
    <command detect_errors="aggressive"><![CDATA[
        #for $grouping in $groupings:
            #set grp_str = $grouping.groups.__str__
            #if grp_str:
                #for $grp in grp_str.split(','):
                    echo -e "$grp\t$grouping.name" >> $design;

    <help>
<![CDATA[

@MOTHUR_OVERVIEW@

**Command Documenation**

Make Design creates a design file for use in mothur commands: merge.groups_, indicator_, and metastats_.
A design file looks like the group file. It is a 2 column tab delimited file, where the first column is the group name and the second column is the set the group belongs to.

.. _merge.groups: http://www.mothur.org/wiki/Merge.groups
.. _indicator: http://www.mothur.org/wiki/Indicator
.. _metastats: http://www.mothur.org/wiki/Metastats
]]>
    </help>
    <expand macro="citations"/>
</tool>

1:840ac4688cf5

    <description>Assign groups to Sets</description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <expand macro="stdio"/>
    <expand macro="version_command"/>
    <command><![CDATA[
        @SHELL_OPTIONS@

        #for $grouping in $groupings:
            #set grp_str = $grouping.groups.__str__
            #if grp_str:
                #for $grp in grp_str.split(','):
                    echo -e "$grp\t$grouping.name" >> $design;

    <help>
<![CDATA[

@MOTHUR_OVERVIEW@

**Command Documentation**

Make Design creates a design file for use in mothur commands: merge.groups_, indicator_, and metastats_.
A design file looks like the group file. It is a 2 column tab delimited file, where the first column is the group name and the second column is the set the group belongs to.

.. _merge.groups: https://www.mothur.org/wiki/Merge.groups
.. _indicator: https://www.mothur.org/wiki/Indicator
.. _metastats: https://www.mothur.org/wiki/Metastats
]]>
    </help>
    <expand macro="citations"/>
</tool>