Mercurial > repos > iuc > mothur_classify_tree
comparison classify.tree.xml @ 3:61b024f58c48 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit ca8dc573528ab7c5290bc6ca029cb989f4755db6
| author | iuc |
|---|---|
| date | Fri, 08 Sep 2017 13:05:48 -0400 |
| parents | c51b7f1f7972 |
| children | b48b0dd9b75e |
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| 2:63b93bf1e038 | 3:61b024f58c48 |
|---|---|
| 31 ]]></command> | 31 ]]></command> |
| 32 <inputs> | 32 <inputs> |
| 33 <param name="taxonomy" type="data" format="mothur.ref.taxonomy" optional="true" label="taxonomy - Taxonomy to screen"/> | 33 <param name="taxonomy" type="data" format="mothur.ref.taxonomy" optional="true" label="taxonomy - Taxonomy to screen"/> |
| 34 <param name="tree" type="data" format="txt" label="tree - Sequences to filter"/> | 34 <param name="tree" type="data" format="txt" label="tree - Sequences to filter"/> |
| 35 <param name="name" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference file"/> | 35 <param name="name" type="data" format="mothur.names" optional="true" label="name - Sequences Name reference file"/> |
| 36 <param name="group" type="data" format="group" optional="true" label="group - Sequences Group reference"/> | 36 <param name="group" type="data" format="mothur.groups" optional="true" label="group - Sequences Group reference"/> |
| 37 <param name="cutoff" type="integer" value="51" min="51" max="100" optional="true" label="cutoff - consensus confidence threshold" help="The default is 51, meaning 51%. Cutoff cannot be below 51"/> | 37 <param name="cutoff" type="integer" value="51" min="51" max="100" optional="true" label="cutoff - consensus confidence threshold" help="The default is 51, meaning 51%. Cutoff cannot be below 51"/> |
| 38 </inputs> | 38 </inputs> |
| 39 <outputs> | 39 <outputs> |
| 40 <expand macro="logfile-output"/> | 40 <expand macro="logfile-output"/> |
| 41 <data name="out_tree" format="txt" from_work_dir="tree.*taxonomy.tre" label="${tool.name} on ${on_string}: taxonomy.tre"/> | 41 <data name="out_tree" format="txt" from_work_dir="tree.*taxonomy.tre" label="${tool.name} on ${on_string}: taxonomy.tre"/> |