Mercurial > repos > iuc > mothur_chop_seqs
comparison chop.seqs.xml @ 6:92bebd51ca52 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/mothur commit 38a2bbee32eaaceeb22d7549b13dbc0c613ee173
| author | iuc |
|---|---|
| date | Tue, 20 Mar 2018 14:13:46 -0400 |
| parents | 2029b3939394 |
| children |
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| 5:ad2be471112f | 6:92bebd51ca52 |
|---|---|
| 46 <param argument="countgaps" type="boolean" truevalue="true" falsevalue="false" checked="false" label="countgaps - Count gaps as bases"/> | 46 <param argument="countgaps" type="boolean" truevalue="true" falsevalue="false" checked="false" label="countgaps - Count gaps as bases"/> |
| 47 <param argument="short" type="boolean" truevalue="true" falsevalue="false" checked="false" label="short - keep sequences that are too short to chop"/> | 47 <param argument="short" type="boolean" truevalue="true" falsevalue="false" checked="false" label="short - keep sequences that are too short to chop"/> |
| 48 <param argument="name" type="data" format="mothur.names" optional="true" label="name file"/> | 48 <param argument="name" type="data" format="mothur.names" optional="true" label="name file"/> |
| 49 <param argument="group" type="data" format="mothur.groups" optional="true" label="group file"/> | 49 <param argument="group" type="data" format="mothur.groups" optional="true" label="group file"/> |
| 50 <param argument="count" type="data" format="mothur.count_table" optional="true" label="count file"/> | 50 <param argument="count" type="data" format="mothur.count_table" optional="true" label="count file"/> |
| 51 <expand macro="param-savelog"/> | |
| 51 </inputs> | 52 </inputs> |
| 52 <outputs> | 53 <outputs> |
| 53 <expand macro="logfile-output"/> | 54 <expand macro="logfile-output"/> |
| 54 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.chop.fasta" label="${tool.name} on ${on_string}: chop.fasta"/> | 55 <data name="out_fasta" format_source="fasta" from_work_dir="fasta*.chop.fasta" label="${tool.name} on ${on_string}: chop.fasta"/> |
| 55 </outputs> | 56 </outputs> |
| 56 <tests> | 57 <tests> |
| 57 <test> | 58 <test> |
| 58 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head"/> | 59 <param name="fasta" value="Mock_S280_L001_R1_001_small.trim.contigs.good.align_head"/> |
| 59 <param name="name" value="Mock_S280_L001_R1_001_small.trim.contigs.good.names"/> | 60 <param name="name" value="Mock_S280_L001_R1_001_small.trim.contigs.good.names"/> |
| 60 <output name="out_fasta" file="Mock_S280_L001_R1_001_small.trim.contigs.good.chop.fasta" compare="contains"/> | 61 <output name="out_fasta" file="Mock_S280_L001_R1_001_small.trim.contigs.good.chop.fasta" compare="contains"/> |
| 62 <param name="savelog" value="true"/> | |
| 61 <expand macro="logfile-test"/> | 63 <expand macro="logfile-test"/> |
| 62 </test> | 64 </test> |
| 63 </tests> | 65 </tests> |
| 64 <help><![CDATA[ | 66 <help><![CDATA[ |
| 65 | 67 |