Mercurial > repos > iuc > molecule_datatypes
comparison datatypes_conf.xml @ 0:8714f927a6ee draft default tip
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| author | iuc |
|---|---|
| date | Tue, 29 Oct 2013 11:14:04 -0400 |
| parents | |
| children |
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| -1:000000000000 | 0:8714f927a6ee |
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| 1 <?xml version="1.0"?> | |
| 2 <datatypes> | |
| 3 <datatype_files> | |
| 4 <datatype_file name="molecules.py"/> | |
| 5 </datatype_files> | |
| 6 <registration> | |
| 7 <!--Cheminformatics Datatypes --> | |
| 8 <datatype extension="smi" type="galaxy.datatypes.molecules:SMILES" display_in_upload="True"> | |
| 9 <!-- The ordering is important. The first one is considered as default converter in the build-in conversion function -> (as sdf)--> | |
| 10 <converter file="smi_to_sdf_converter.xml" target_datatype="sdf"/> | |
| 11 <converter file="smi_to_inchi_converter.xml" target_datatype="inchi"/> | |
| 12 <converter file="smi_to_cml_converter.xml" target_datatype="cml"/> | |
| 13 <converter file="smi_to_mol_converter.xml" target_datatype="mol"/> | |
| 14 <converter file="smi_to_mol2_converter.xml" target_datatype="mol2"/> | |
| 15 <converter file="smi_to_smi_converter.xml" target_datatype="smi"/> | |
| 16 </datatype> | |
| 17 <datatype extension="sdf" type="galaxy.datatypes.molecules:SDF" display_in_upload="True"> | |
| 18 <converter file="sdf_to_smi_converter.xml" target_datatype="smi"/> | |
| 19 <converter file="sdf_to_inchi_converter.xml" target_datatype="inchi"/> | |
| 20 <converter file="sdf_to_mol2_converter.xml" target_datatype="mol2"/> | |
| 21 <converter file="sdf_to_cml_converter.xml" target_datatype="cml"/> | |
| 22 </datatype> | |
| 23 <datatype extension="inchi" type="galaxy.datatypes.molecules:InChI" display_in_upload="True"> | |
| 24 <converter file="inchi_to_smi_converter.xml" target_datatype="smi"/> | |
| 25 <converter file="inchi_to_sdf_converter.xml" target_datatype="sdf"/> | |
| 26 <converter file="inchi_to_mol_converter.xml" target_datatype="mol"/> | |
| 27 <converter file="inchi_to_mol2_converter.xml" target_datatype="mol2"/> | |
| 28 <converter file="inchi_to_cml_converter.xml" target_datatype="cml"/> | |
| 29 </datatype> | |
| 30 <datatype extension="mol" type="galaxy.datatypes.molecules:MOL" display_in_upload="True"> | |
| 31 <converter file="mol_to_smi_converter.xml" target_datatype="smi"/> | |
| 32 <converter file="mol_to_inchi_converter.xml" target_datatype="inchi"/> | |
| 33 <converter file="mol_to_mol2_converter.xml" target_datatype="mol2"/> | |
| 34 <converter file="mol_to_cml_converter.xml" target_datatype="cml"/> | |
| 35 </datatype> | |
| 36 <datatype extension="mol2" type="galaxy.datatypes.molecules:MOL2" display_in_upload="False"> | |
| 37 <converter file="mol2_to_smi_converter.xml" target_datatype="smi"/> | |
| 38 <converter file="mol2_to_sdf_converter.xml" target_datatype="sdf"/> | |
| 39 <converter file="mol2_to_inchi_converter.xml" target_datatype="inchi"/> | |
| 40 <converter file="mol2_to_mol_converter.xml" target_datatype="mol"/> | |
| 41 <converter file="mol2_to_cml_converter.xml" target_datatype="cml"/> | |
| 42 </datatype> | |
| 43 <datatype extension="cml" type="galaxy.datatypes.molecules:CML" display_in_upload="True"> | |
| 44 <converter file="cml_to_smi_converter.xml" target_datatype="smi"/> | |
| 45 <converter file="cml_to_inchi_converter.xml" target_datatype="inchi"/> | |
| 46 <converter file="cml_to_sdf_converter.xml" target_datatype="sdf"/> | |
| 47 <converter file="cml_to_mol2_converter.xml" target_datatype="mol2"/> | |
| 48 </datatype> | |
| 49 <datatype extension="fps" type="galaxy.datatypes.molecules:FPS" mimetype="text/html" display_in_upload="True" /> | |
| 50 <datatype extension="obfs" type="galaxy.datatypes.molecules:OBFS" mimetype="text/html" display_in_upload="False" /> | |
| 51 <datatype extension="phar" type="galaxy.datatypes.molecules:PHAR" display_in_upload="False" /> | |
| 52 <datatype extension="pdb" type="galaxy.datatypes.molecules:PDB" display_in_upload="True" /> | |
| 53 </registration> | |
| 54 <sniffers> | |
| 55 <sniffer type="galaxy.datatypes.molecules:SDF"/> | |
| 56 <sniffer type="galaxy.datatypes.molecules:PDB"/> | |
| 57 <sniffer type="galaxy.datatypes.molecules:MOL2"/> | |
| 58 <sniffer type="galaxy.datatypes.molecules:InChI"/> | |
| 59 <sniffer type="galaxy.datatypes.molecules:FPS"/> | |
| 60 <sniffer type="galaxy.datatypes.molecules:CML"/> | |
| 61 <!-- TODO: see molecules.py <sniffer type="galaxy.datatypes.molecules:SMILES"/>--> | |
| 62 </sniffers> | |
| 63 </datatypes> |