# HG changeset patch
# User iuc
# Date 1510161589 18000
# Node ID e738fb9d4a22cfdedc6a0c5395d6150774a6933a
# Parent  6090793a47e85cdfb89ca1d4abdd76a37e66fa8f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit ba952bea405513c0d81a33019a4c2fbcdcf8e783

diff -r 6090793a47e8 -r e738fb9d4a22 minimap2.xml
--- a/minimap2.xml	Wed Nov 08 10:01:55 2017 -0500
+++ b/minimap2.xml	Wed Nov 08 12:19:49 2017 -0500
@@ -1,5 +1,5 @@
 <?xml version="1.0"?>
-<tool id="minimap2" name="Map with minimap2" version="2.4" profile="17.01">
+<tool id="minimap2" name="Map with minimap2" version="2.4.1" profile="17.01">
     <description>A fast pairwise aligner for genomic and spliced nucleotide sequences</description>
     <requirements>
         <requirement type="package" version="2.4">minimap2</requirement>
@@ -106,6 +106,7 @@
     -O $io_options.output_format
     #if $io_options.output_format == 'CRAM':
         --reference reference.fa
+        --output-fmt-option no_ref
     #end if
     -o '$alignment_output'
 ]]>