# HG changeset patch
# User iuc
# Date 1509743702 14400
# Node ID acb6d016cabef97f9882768c489f76acec2b6e1f
# Parent  fd6251adf77bb3b942ef95abc7bcb2e333096558
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d467ba21d5a83a68e87625c9e9157b37eac03eda-dirty

diff -r fd6251adf77b -r acb6d016cabe minimap2.xml
--- a/minimap2.xml	Fri Nov 03 17:00:44 2017 -0400
+++ b/minimap2.xml	Fri Nov 03 17:15:02 2017 -0400
@@ -8,7 +8,10 @@
     <version_command>minimap2 --version</version_command>
     <command>
         <![CDATA[
-    ln -f -s '$reference_source.ref_file' reference.fa &&
+    #if '$reference_source.reference_source_selector == 'history':
+        ln -f -s '$reference_source.ref_file' reference.fa &&
+    #else:
+        ln -f -s '$reference_source.ref_file.fields.path' reference.fa
     minimap2 -a
     -x $analysis_type_selector
     ## indexing options