Mercurial > repos > iuc > minimap2

diff minimap2.xml @ 3:acb6d016cabe draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit d467ba21d5a83a68e87625c9e9157b37eac03eda-dirty
author iuc
date Fri, 03 Nov 2017 17:15:02 -0400
parents 9b44afd426fd
children cd71cf88d971
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line diff
--- a/minimap2.xml	Fri Nov 03 17:00:44 2017 -0400
+++ b/minimap2.xml	Fri Nov 03 17:15:02 2017 -0400
@@ -8,7 +8,10 @@
     <version_command>minimap2 --version</version_command>
     <command>
         <![CDATA[
-    ln -f -s '$reference_source.ref_file' reference.fa &&
+    #if '$reference_source.reference_source_selector == 'history':
+        ln -f -s '$reference_source.ref_file' reference.fa &&
+    #else:
+        ln -f -s '$reference_source.ref_file.fields.path' reference.fa
     minimap2 -a
     -x $analysis_type_selector
     ## indexing options