Mercurial > repos > iuc > minimap2
comparison minimap2.xml @ 21:597f238f2b4d draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/minimap2 commit 219f9463094519d9a97c3dfb93f0e1a2233c0243"
| author | iuc |
|---|---|
| date | Fri, 25 Jun 2021 17:45:04 +0000 |
| parents | bb2c5a19ecbd |
| children | b81d44caa1a0 |
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| 20:bb2c5a19ecbd | 21:597f238f2b4d |
|---|---|
| 129 ## Output options | 129 ## Output options |
| 130 $io_options.Q | 130 $io_options.Q |
| 131 $io_options.L | 131 $io_options.L |
| 132 $io_options.c | 132 $io_options.c |
| 133 #if $io_options.cs: | 133 #if $io_options.cs: |
| 134 --cs $io_options.cs | 134 --cs=$io_options.cs |
| 135 #end if | 135 #end if |
| 136 $io_options.Y | 136 $io_options.Y |
| 137 #if $io_options.K: | 137 #if $io_options.K: |
| 138 -K $io_options.K | 138 -K $io_options.K |
| 139 #end if | 139 #end if |
| 468 <param name="E" value="2" /> | 468 <param name="E" value="2" /> |
| 469 <param name="E2" value="1" /> | 469 <param name="E2" value="1" /> |
| 470 <param name="z" value="400" /> | 470 <param name="z" value="400" /> |
| 471 <param name="s" value="40" /> | 471 <param name="s" value="40" /> |
| 472 </section> | 472 </section> |
| 473 <section name="io_options"> | |
| 474 <!-- the next setting is a noop for bam output, but tests that | |
| 475 a valid command line is formed for the cs option --> | |
| 476 <param name="cs" value="none" /> | |
| 477 </section> | |
| 473 <output name="alignment_output" ftype="bam" file="minimap2-test1-fasta.bam" lines_diff="4" /> | 478 <output name="alignment_output" ftype="bam" file="minimap2-test1-fasta.bam" lines_diff="4" /> |
| 474 </test> | 479 </test> |
| 475 <test> | 480 <test> |
| 476 <!-- test paf output --> | 481 <!-- test paf output --> |
| 477 <param name="reference_source_selector" value="history" /> | 482 <param name="reference_source_selector" value="history" /> |