Mercurial > repos > iuc > megahit

changeset 5:b2a905087e9c draft

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"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/megahit commit 4277f95c11b67fae2007521af6473af5d09b7f1f"
author iuc
date Tue, 08 Sep 2020 08:34:00 +0000
parents 130301d9c09d
children 00f89dc38847
files megahit_wrapper.xml
diffstat 1 files changed, 3 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/megahit_wrapper.xml	Mon Feb 18 12:14:17 2019 -0500
+++ b/megahit_wrapper.xml	Tue Sep 08 08:34:00 2020 +0000
@@ -1,5 +1,5 @@
 <?xml version='1.0' encoding='utf-8'?>
-<tool id="megahit" name="MEGAHIT" version="@VERSION@.4">
+<tool id="megahit" name="MEGAHIT" version="@VERSION@.5">
     <description>for metagenomics assembly</description>
     <macros>
         <token name="@VERSION@">1.1.3</token>
@@ -10,6 +10,7 @@
     <version_command>megahit --version</version_command>
     <command detect_errors="exit_code"><![CDATA[
 megahit
+    --num-cpu-threads \${GALAXY_SLOTS:-4}
     #if $input_option.choice == 'paired'
         -1 '${input_option.fastq_input1}'
         -2 '${input_option.fastq_input2}'
@@ -184,4 +185,4 @@
     <citations>
         <citation type="doi">10.1093/bioinformatics/btv033</citation>
     </citations>
-</tool>
\ No newline at end of file
+</tool>