Mercurial > repos > iuc > macs2

changeset 62:1ac88e46ee0f draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e0d4688a59e6eeba33adcfe803ac43d0bc2863e7"
author iuc
date Tue, 31 Aug 2021 09:16:10 +0000
parents 644444825ef9
children 25e46cf1ee36
files macs2_bdgbroadcall.xml macs2_bdgcmp.xml macs2_bdgdiff.xml macs2_bdgpeakcall.xml macs2_callpeak.xml macs2_filterdup.xml macs2_macros.xml macs2_predictd.xml macs2_randsample.xml macs2_refinepeak.xml
diffstat 10 files changed, 14 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/macs2_bdgbroadcall.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_bdgbroadcall.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_bdgbroadcall" name="MACS2 bdgbroadcall" version="@VERSION_STRING@.0">
     <description>Call broad peaks from bedGraph output</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_bdgcmp.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_bdgcmp.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_bdgcmp" name="MACS2 bdgcmp" version="@VERSION_STRING@.0">
     <description>Deduct noise by comparing two signal tracks in bedGraph</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_bdgdiff.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_bdgdiff.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_bdgdiff" name="MACS2 bdgdiff" version="@VERSION_STRING@.1" profile="17.09">
     <description>Differential peak detection based on paired four bedgraph files</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_bdgpeakcall.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_bdgpeakcall.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_bdgpeakcall" name="MACS2 bdgpeakcall" version="@VERSION_STRING@.0">
     <description>Call peaks from bedGraph output</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_callpeak.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_callpeak.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_callpeak" name="MACS2 callpeak" version="@VERSION_STRING@.6" profile="17.09">
     <description>Call peaks from alignment results</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_filterdup.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_filterdup.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_filterdup" name="MACS2 filterdup" version="@VERSION_STRING@.1">
     <description>Remove duplicate reads at the same position</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_macros.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_macros.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -8,7 +8,11 @@
             <yield />
         </requirements>
     </xml>
-
+    <xml name="bio_tools">
+        <xrefs>
+            <xref type="bio.tools">macs</xref>
+        </xrefs>
+    </xml>
     <token name="@home_dir@"><![CDATA[
         export PYTHON_EGG_CACHE=`pwd` &&
     ]]></token>
--- a/macs2_predictd.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_predictd.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_predictd" name="MACS2 predictd" version="@VERSION_STRING@.1">
     <description>Predict 'd' or fragment size from alignment results</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_randsample.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_randsample.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_randsample" name="MACS2 randsample" version="@VERSION_STRING@.1">
     <description>Randomly sample number or percentage of total reads</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>
--- a/macs2_refinepeak.xml	Thu Apr 25 17:48:32 2019 -0400
+++ b/macs2_refinepeak.xml	Tue Aug 31 09:16:10 2021 +0000
@@ -1,5 +1,6 @@
 <tool id="macs2_refinepeak" name="MACS2 refinepeak" version="@VERSION_STRING@.1">
     <description>Refine peak summits and give scores measuring balance of forward- backward tags (Experimental)</description>
+    <expand macro="bio_tools"/>
     <macros>
         <import>macs2_macros.xml</import>
     </macros>