# HG changeset patch
# User bgruening
# Date 1400610766 14400
# Node ID b8b8d3c6dede2f57862216bcd97d615eb80848f4
# Parent  a63785ec271c6101f8ed06a232f8345c9a6379dc
Uploaded

diff -r a63785ec271c -r b8b8d3c6dede macs2_callpeak.xml
--- a/macs2_callpeak.xml	Tue May 20 10:08:03 2014 -0400
+++ b/macs2_callpeak.xml	Tue May 20 14:32:46 2014 -0400
@@ -10,7 +10,6 @@
         <import>macs2_macros.xml</import>
     </macros>
     <command>
-        #import os
         #set $temp_stderr = 'macs2_stderr'
         (macs2 callpeak
 
@@ -22,7 +21,7 @@
             #end if
 
         #for $ifile in $input_treatment_file[0]:
-            #if ${ ifile.ext.upper() } == 'BAM' and ${ bampe }:
+            #if $ifile.ext.upper() == 'BAM' and ${ bampe }:
                 --format BAMPE
             #else:
                 --format='$ifile.ext.upper()'