# HG changeset patch # User iuc # Date 1400620080 14400 # Node ID a950fb652d18861130a41a0e664c2207ee57791c # Parent b8b8d3c6dede2f57862216bcd97d615eb80848f4 Uploaded diff -r b8b8d3c6dede -r a950fb652d18 macs2_callpeak.xml --- a/macs2_callpeak.xml Tue May 20 14:32:46 2014 -0400 +++ b/macs2_callpeak.xml Tue May 20 17:08:00 2014 -0400 @@ -21,7 +21,7 @@ #end if #for $ifile in $input_treatment_file[0]: - #if $ifile.ext.upper() == 'BAM' and ${ bampe }: + #if $ifile.ext.upper() == 'BAM' and $bampe: --format BAMPE #else: --format='$ifile.ext.upper()'