# HG changeset patch
# User hackdna
# Date 1400700881 14400
# Node ID 6ed004769284b4b0ff74921174e725d09859ff6f
# Parent  a950fb652d18861130a41a0e664c2207ee57791c
Bug fixes in Cheetah template code.

diff -r a950fb652d18 -r 6ed004769284 macs2_callpeak.xml
--- a/macs2_callpeak.xml	Tue May 20 17:08:00 2014 -0400
+++ b/macs2_callpeak.xml	Wed May 21 15:34:41 2014 -0400
@@ -20,12 +20,12 @@
                 -c ${ ' '.join( map( lambda x:'"%s"' % ( x ), $input_control_file ) ) }
             #end if
 
-        #for $ifile in $input_treatment_file[0]:
+        #for $ifile in $input_treatment_file:
             #if $ifile.ext.upper() == 'BAM' and $bampe:
                 --format BAMPE
-            #else:
+            #else
                 --format='$ifile.ext.upper()'
-            #end
+            #end if
         #end for
 
         @effective_genome_size@