Mercurial > repos > iuc > macs2
diff macs2_macros.xml @ 21:b64dcea4531a draft
Uploaded
| author | bgruening |
|---|---|
| date | Fri, 02 May 2014 16:31:01 -0400 |
| parents | f63ccb331626 |
| children | 59845dc3331f |
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--- a/macs2_macros.xml Thu May 01 17:07:46 2014 -0400 +++ b/macs2_macros.xml Fri May 02 16:31:01 2014 -0400 @@ -10,7 +10,10 @@ <xml name="conditional_effective_genome_size"> <conditional name="effective_genome_size_options"> - <param name="effective_genome_size_options_selector" type="select" label="Effective genome size" help="--gsize"> + <param name="effective_genome_size_options_selector" type="select" label="Effective genome size" + help="The effective genome size is the portion of the genome that is mappable. Large fractions of the genome are stretches of NNNN that should be discarded. + Also, if repetitive regions were not included in the mapping of reads, the effective genome size needs to be adjusted accordingly. + See Table 2 of http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0030377 or http://www.nature.com/nbt/journal/v27/n1/fig_tab/nbt.1518_T1.html for several effective genome sizes. (--gsize)"> <option value="2451960000">Human (2.451.960.000)</option> <option value="2150570000">Mouse (2.150.570.000)</option> <option value="121400000">Fly (121.400.000)</option>