Mercurial > repos > iuc > macs2

diff macs2_filterdup.xml @ 19:05aca18fd8dc draft

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Uploaded
author iuc
date Wed, 23 Apr 2014 18:25:51 -0400
parents 35a80f8dda5c
children f63ccb331626
line wrap: on
line diff
--- a/macs2_filterdup.xml	Sat Feb 15 15:50:45 2014 -0500
+++ b/macs2_filterdup.xml	Wed Apr 23 18:25:51 2014 -0400
@@ -7,17 +7,17 @@
     </macros>
     <command>
         macs2 filterdup
-            -i $infile
-            -o $outfile
+            -i "${ infile }"
+            -o "${ outfile }"
 
-        --format '$infile.extension.upper()'
+        --format '${ infile.extension.upper() }'
         @effective_genome_size@
         @tag_size@
-        --pvalue $pvalue
+        --pvalue "${ pvalue }"
         #if str( $keep_dup_options.keep_dup_options_selector ) == "user":
-            --keep-dup $keep_dup_options.user_keepdup
+            --keep-dup "${ keep_dup_options.user_keepdup }"
         #else
-            --keep-dup $keep_dup_options.keep_dup_options_selector
+            --keep-dup "${ keep_dup_options.keep_dup_options_selector }"
         #end if
     </command>
     <expand macro="stdio" />