Mercurial > repos > iuc > macs2

diff macs2_bdgpeakcall.xml @ 19:05aca18fd8dc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Wed, 23 Apr 2014 18:25:51 -0400
parents ab352bb83cb2
children 59845dc3331f
line wrap: on
line diff
--- a/macs2_bdgpeakcall.xml	Sat Feb 15 15:50:45 2014 -0500
+++ b/macs2_bdgpeakcall.xml	Wed Apr 23 18:25:51 2014 -0400
@@ -9,14 +9,15 @@
     </macros>
     <command>
         macs2 bdgpeakcall
-        --ifile $infile
-        --cutoff $cutoff
-        --min-length $minlen
-        --max-gap $maxgap
-        $callsummits
-        $notrackline
-        --ofile "macs2_bdgpeakcall.bdg";
-        awk '!/^track name/' "macs2_bdgpeakcall.bdg" > $outfile
+        --ifile "${ infile }"
+        --cutoff "${ cutoff }"
+        --min-length "${ minlen }"
+        --max-gap "${ maxgap }"
+        ${ callsummits }
+        ${ notrackline }
+        --ofile "macs2_bdgpeakcall.bdg"
+        &amp;&amp;
+        awk '!/^track name/' "macs2_bdgpeakcall.bdg" > "${ outfile }"
     </command>
     <expand macro="stdio" />
     <inputs>