Mercurial > repos > iuc > macs2

diff macs2_bdgdiff.xml @ 19:05aca18fd8dc draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author iuc
date Wed, 23 Apr 2014 18:25:51 -0400
parents 35a80f8dda5c
children 59845dc3331f
line wrap: on
line diff
--- a/macs2_bdgdiff.xml	Sat Feb 15 15:50:45 2014 -0500
+++ b/macs2_bdgdiff.xml	Wed Apr 23 18:25:51 2014 -0400
@@ -7,15 +7,15 @@
     </macros>
     <command>
         macs2 bdgdiff
-            --t1 $infile_pileup_cond1
-            --t2 $infile_pileup_cond2
-            --c1 $infile_control_cond1
-            --c2 $infile_control_cond2
-            --cutoff $cutoff
-            --min-len $minlen
-            --depth1 $depth1
-            --depth2 $depth2
-            --max-gap $maxgap
+            --t1 "${ infile_pileup_cond1 }"
+            --t2 "${ infile_pileup_cond2 }"
+            --c1 "${ infile_control_cond1 }"
+            --c2 "${ infile_control_cond2 }"
+            --cutoff "${ cutoff }"
+            --min-len "${ minlen }"
+            --depth1 "${ depth1 }"
+            --depth2 "${ depth2 }"
+            --max-gap "${ maxgap }"
             --o-prefix MACS2
 
     </command>