Mercurial > repos > iuc > macs2
comparison macs2_randsample.xml @ 1:d202e3d663bb draft
Uploaded
| author | iuc |
|---|---|
| date | Thu, 16 Jan 2014 15:44:43 -0500 |
| parents | 9c157b556c33 |
| children | da0a1fcf7fe0 |
comparison
equal
deleted
inserted
replaced
| 0:9c157b556c33 | 1:d202e3d663bb |
|---|---|
| 1 <tool id="macs2_randsamoke" name="Randomly sample number or percentage" version="2.0.10.0"> | 1 <tool id="macs2_randsamoke" name="Randomly sample number or percentage" version="2.0.10.0"> |
| 2 <description>of total reads</description> | 2 <description>of total reads</description> |
| 3 <requirements> | 3 <expand macro="requirements" /> |
| 4 <requirement type="python-module">macs2</requirement> | 4 <expand macro="version_command" /> |
| 5 <requirement type="python-module">numpy</requirement> | 5 <macros> |
| 6 <requirement type="package" version="2.0.10.2">macs2</requirement> | 6 <import>macs2_macros.xml</import> |
| 7 <requirement type="package" version="1.7.1">numpy</requirement> | 7 </macros> |
| 8 </requirements> | |
| 9 <command> | 8 <command> |
| 10 macs2 randsample | 9 macs2 randsample |
| 11 -t $infile | 10 -t $infile |
| 12 -o $outfile | 11 -o $outfile |
| 13 | 12 |
| 23 </command> | 22 </command> |
| 24 <inputs> | 23 <inputs> |
| 25 | 24 |
| 26 <!--may need to add a few more formats at later time--> | 25 <!--may need to add a few more formats at later time--> |
| 27 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" /> | 26 <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" /> |
| 28 <param name="tsize" type="float" label="Tag size" value="-1.0" help="This will overide the auto detected tag size. DEFAULT: Not set (-1.0) (--tsize)" /> | 27 <expand macro="tag_size" /> |
| 29 | 28 |
| 30 <conditional name="method_options"> | 29 <conditional name="method_options"> |
| 31 <param name="method_options_selector" type="select" label="Select action to be performed"> | 30 <param name="method_options_selector" type="select" label="Select action to be performed"> |
| 32 <option value="percentage">Percentage</option> | 31 <option value="percentage">Percentage</option> |
| 33 <option value="number">Number</option> | 32 <option value="number">Number</option> |