comparison macs2_refinepeak.xml @ 61:644444825ef9 draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/macs2 commit e90e79e18362561d0060d2c162f1938feebdbc29

60:75bd115a2085

<tool id="macs2_refinepeak" name="MACS2 refinepeak" version="@VERSION_STRING@.0">
    <description>Refine peak summits and give scores measuring balance of forward- backward tags (Experimental)</description>
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <expand macro="requirements" />

            --cutoff '${ cutoff }'
            --window-size '${ winsize }'
            --ofile '${ outfile }'
    ]]></command>
    <inputs>
        <param name="infile" type="data" format="sam,bam,bed" label="Sequencing alignment file" />
        <param name="bed_infile" type="data" format="bed" label="Candidate peak file in BED format" />
        <param name="cutoff" type="float" label="Cutoff" value="5.0" help="default: 5.0 (--cutoff)"/>
        <param name="winsize" type="integer" value="200" label="Scan window size on both side of the summit" help="default: 200bp (--window-size)" />
    </inputs>

61:644444825ef9

<tool id="macs2_refinepeak" name="MACS2 refinepeak" version="@VERSION_STRING@.1">
    <description>Refine peak summits and give scores measuring balance of forward- backward tags (Experimental)</description>
    <macros>
        <import>macs2_macros.xml</import>
    </macros>
    <expand macro="requirements" />

            --cutoff '${ cutoff }'
            --window-size '${ winsize }'
            --ofile '${ outfile }'
    ]]></command>
    <inputs>
        <param name="infile" type="data" format="bam,bed" label="Sequencing alignment file" />
        <param name="bed_infile" type="data" format="bed" label="Candidate peak file in BED format" />
        <param name="cutoff" type="float" label="Cutoff" value="5.0" help="default: 5.0 (--cutoff)"/>
        <param name="winsize" type="integer" value="200" label="Scan window size on both side of the summit" help="default: 200bp (--window-size)" />
    </inputs>