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1
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1 <macros>
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2 <xml name="requirements">
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3 <requirements>
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4 <requirement type="python-module">macs2</requirement>
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5 <requirement type="python-module">numpy</requirement>
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6 <requirement type="package" version="2.0.10.2">macs2</requirement>
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7 <requirement type="package" version="1.7.1">numpy</requirement>
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8 <yield />
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9 </requirements>
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10 </xml>
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11
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12 <xml name="conditional_effective_genome_size">
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13 <conditional name="effective_genome_size_options">
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14 <param name="effective_genome_size_options_selector" type="select" label="Effective genome size" help="--gsize">
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15 <option value="3300000000">Human (3.300.000.000)</option>
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16 <option value="3000000000">Mouse (3.000.000.000)</option>
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17 <option value="190000000">Fly (190.000.000)</option>
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18 <option value="130000000">Worm (130.000.000)</option>
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19 <option value="user_defined">User defined</option>
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20 </param>
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21 <when value="user_defined">
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22 <param name="gsize" type="integer" size="12" label="Effective genome size" value=""/>
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23 </when>
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24 </conditional>
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25 </xml>
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26
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27 <token name="@effective_genome_size@">
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28 #if $effective_genome_size_options.effective_genome_size_options_selector == 'user_defined':
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29 --gsize $effective_genome_size_options.gsize
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30 #else:
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31 --gsize $effective_genome_size_options.effective_genome_size_options_selector
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32 #end if
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33 </token>
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34
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35 <xml name="version_command">
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36 <version_command>macs2 --version</version_command>
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37 </xml>
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38
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39 <xml name="tag_size">
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40 <param name="tsize" type="float" label="Tag size" value="-1.0" help="This will overide the auto detected tag size. DEFAULT: Not set (-1.0) (--tsize)" />
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41 </xml>
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42
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43 <xml name="stdio">
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44 <stdio>
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45 <regex match="Error:" />
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46 <regex match="EXception:" />
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47 </stdio>
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48 </xml>
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49 </macros>
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