# HG changeset patch
# User iuc
# Date 1773846652 0
# Node ID 56fbd1f3ab26bd435de490a5e94f7ba7ee925f00
# Parent  de9294f0826f2be5f795c120645de320e246e48f
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/main/tools/haltools commit 30ac0af6dfa729277011bcd73cd5560efa03fb97

diff -r de9294f0826f -r 56fbd1f3ab26 macros.xml
--- a/macros.xml	Fri Feb 06 10:36:13 2026 +0000
+++ b/macros.xml	Wed Mar 18 15:10:52 2026 +0000
@@ -4,8 +4,9 @@
             <requirement type="package" version="@TOOL_VERSION@">cactus</requirement>
         </requirements>
     </xml>
-    <token name="@TOOL_VERSION@">2.9.9</token>
+    <token name="@TOOL_VERSION@">3.1.4</token>
     <token name="@VERSION_SUFFIX@">0</token>
+    <token name="@VERSION_SUFFIX_HAL2VG@">1</token>
     <token name="@PROFILE@">25.1</token>
     <xml name="stdio">
         <stdio>
@@ -171,7 +172,7 @@
         <validator type="regex" message="Enter without leading or trailing spaces">^\S(?:.*\S)?$</validator>   
     </xml>
     <xml name="validator_comma_list">
-        <validator type="regex" message="Enter a comma separated list of genomes, without leading or trailing spaces">^\S(?:[^,]*\S)?(?:,\S(?:[^,]*\S)?)*$</validator>
+        <validator type="regex" message="Enter a comma separated list of genomes, without leading or trailing spaces">^[^,\s]+(,[^,\s]+)*$</validator>
     </xml>
     <xml name="validator_newick">
         <validator type="regex" message="Enter a Newick tree">^.*;$</validator>  
diff -r de9294f0826f -r 56fbd1f3ab26 test-data/halAddToBranch_bot_input.hal
Binary file test-data/halAddToBranch_bot_input.hal has changed
diff -r de9294f0826f -r 56fbd1f3ab26 test-data/halAddToBranch_top_input.hal
Binary file test-data/halAddToBranch_top_input.hal has changed
diff -r de9294f0826f -r 56fbd1f3ab26 test-data/halTestExtended.hal
Binary file test-data/halTestExtended.hal has changed