Mercurial > repos > iuc > goseq

changeset 5:49b3558dbf68 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq commit 11d5198120837fa4eecb0bef8e2c04106eab63c2
author iuc
date Sat, 09 Feb 2019 09:06:20 -0500
parents 9e6226b6d2ad
children 85f3b5ab2bf8
files goseq.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/goseq.xml	Mon Jan 28 04:27:06 2019 -0500
+++ b/goseq.xml	Sat Feb 09 09:06:20 2019 -0500
@@ -1,11 +1,11 @@
-<tool id="goseq" name="goseq" version="1.32.0">
+<tool id="goseq" name="goseq" version="1.34.0">
     <description>tests for overrepresented gene categories</description>
     <requirements>
-        <requirement type="package" version="1.32.0">bioconductor-goseq</requirement>
-        <requirement type="package" version="3.6.0">bioconductor-org.hs.eg.db</requirement>
-        <requirement type="package" version="3.6.0">bioconductor-org.dm.eg.db</requirement>
-        <requirement type="package" version="3.6.0">bioconductor-org.dr.eg.db</requirement>
-        <requirement type="package" version="3.6.0">bioconductor-org.mm.eg.db</requirement>
+        <requirement type="package" version="1.34.0">bioconductor-goseq</requirement>
+        <requirement type="package" version="3.7.0">bioconductor-org.hs.eg.db</requirement>
+        <requirement type="package" version="3.7.0">bioconductor-org.dm.eg.db</requirement>
+        <requirement type="package" version="3.7.0">bioconductor-org.dr.eg.db</requirement>
+        <requirement type="package" version="3.7.0">bioconductor-org.mm.eg.db</requirement>
         <requirement type="package" version="0.7.8">r-dplyr</requirement>
         <requirement type="package" version="3.1.0">r-ggplot2</requirement>
         <requirement type="package" version="1.6.0">r-optparse</requirement>
@@ -188,7 +188,7 @@
             <output name="wallenius_tab">
                 <assert_contents>
                     <has_text_matching expression="category.*over_represented_pvalue.*under_represented_pvalue.*numDEInCat.*numInCat.*term.*ontology.*p.adjust.over_represented.*p.adjust.under_represented" />
-                    <has_text_matching expression="GO:0005576.*5.2" />
+                    <has_text_matching expression="GO:0005576.*8.8" />
                 </assert_contents>
             </output>
         </test>
@@ -203,7 +203,7 @@
             <output name="wallenius_tab">
                 <assert_contents>
                     <has_text_matching expression="category.*over_represented_pvalue.*under_represented_pvalue.*numDEInCat.*numInCat.*term.*ontology.*p.adjust.over_represented.*p.adjust.under_represented" />
-                    <has_text_matching expression="GO:0031324.*0.12" />
+                    <has_text_matching expression="GO:0031324.*0.50" />
                 </assert_contents>
             </output>
         </test>