# HG changeset patch # User iuc # Date 1497185844 14400 # Node ID 2be7cffafc398092521a8ddc511d85fccd43f78e # Parent 084d775153434b15a4268cd7e60d0ccfe781329b planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/goseq commit 027e71072ff901d6b9593b37113c7b1f8b77527b diff -r 084d77515343 -r 2be7cffafc39 goseq.xml --- a/goseq.xml Thu Nov 17 16:40:06 2016 -0500 +++ b/goseq.xml Sun Jun 11 08:57:24 2017 -0400 @@ -26,7 +26,7 @@ --wallenius_tab '$wallenius_tab' #end if #if $methods['hypergeometric']: - --nobias_tab 'nobias_tab' + --nobias_tab '$nobias_tab' #end if --repcnt '$methods.repcnt' --sampling_tab '$sampling_tab' @@ -110,8 +110,7 @@ *Gene category file:* You will also need a file describing the membership of genes in categories. The format of this file is gene_id in the first column, - category name in the second column. If you are interested in gene ontology categories you can use the getgo file to retrive - gene ontologies for model organisms, or you can construct your own file. + category identifier in the second column. **Method options**