Path to file with differential gene expression result

Path to tabular file mapping gene id to length

Genome [used for looking up correct gene length]

Categories to get can include one or more of GO:CC, GO:BP, GO:MF, KEGG

Path to tabular file with gene_id <-> category mapping

Path to output file with P-values estimated using wallenius distribution

Path to output file with P-values estimated using hypergeometric distribution and no correction for gene length bias

Path to output file with P-values estimated using sampling distribution

Multiple hypothesis testing correction method to use

A large number of gene may have no GO term annotated. If this option is set to FALSE, genes without category will be ignored in the calculation of p-values(default behaviour). If TRUE these genes will count towards the total number of genes outside the tested category (default behaviour prior to version 1.15.2).

Path to output PDF with top10 over-rep GO terms

Path to plot comparing sampling with wallenius p-values

Path to file with categories (GO/KEGG terms) and associated DE genes