Mercurial > repos > iuc > gffcompare
diff test-data/gffcompare_out3.stats @ 4:7eeb9fba4858 draft
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gffcompare commit 95fe80d08fb14c4c344da4979290e72261e31ae5"
| author | iuc |
|---|---|
| date | Thu, 10 Oct 2019 04:05:19 -0400 |
| parents | 84845ad0d35c |
| children | 9e282a956012 |
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--- a/test-data/gffcompare_out3.stats Mon May 27 13:53:51 2019 -0400 +++ b/test-data/gffcompare_out3.stats Thu Oct 10 04:05:19 2019 -0400 @@ -1,29 +1,29 @@ -# gffcompare v0.10.6 | Command line was: +# gffcompare v0.11.2 | Command line was: #gffcompare -r ref_annotation -R -T -e 100 -d 100 -p TCONS gffcompare_in4_gtf # #= Summary for dataset: gffcompare_in4_gtf # Query mRNAs : 35 in 29 loci (15 multi-exon transcripts) # (3 multi-transcript loci, ~1.2 transcripts per locus) -# Reference mRNAs : 20 in 7 loci (19 multi-exon) +# Reference mRNAs : 19 in 6 loci (19 multi-exon) # Super-loci w/ reference transcripts: 6 #-----------------| Sensitivity | Precision | - Base level: 72.6 | 60.7 | - Exon level: 80.0 | 55.7 | + Base level: 72.7 | 60.7 | + Exon level: 81.0 | 55.7 | Intron level: 81.2 | 64.4 | Intron chain level: 10.5 | 13.3 | - Transcript level: 10.0 | 5.7 | - Locus level: 28.6 | 6.9 | + Transcript level: 10.5 | 5.7 | + Locus level: 33.3 | 6.9 | Matching intron chains: 2 Matching transcripts: 2 Matching loci: 2 - Missed exons: 3/85 ( 3.5%) + Missed exons: 2/84 ( 2.4%) Novel exons: 46/122 ( 37.7%) Missed introns: 11/69 ( 15.9%) Novel introns: 28/87 ( 32.2%) - Missed loci: 0/7 ( 0.0%) + Missed loci: 0/6 ( 0.0%) Novel loci: 15/29 ( 51.7%) Total union super-loci across all input datasets: 21