view tool_test_output.json @ 17:65f742e605ec draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/gemini commit 344140b8df53b8b7024618bb04594607a045c03a

{"tests": [{"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build', u'annotate_source': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build', u'annotate_source': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_annotate.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_burden.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_comp_hets.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_db_info.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_de_novo.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'annotation_databases': u'No annotation database is available', u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'annotation_databases': u'No annotation database is available', u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_interactions.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'annotation_databases': u'No annotation database is available', u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'annotation_databases': u'No annotation database is available', u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_load.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_lof_sieve.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'annotation_databases': u'No annotation database is available', u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'annotation_databases': u'No annotation database is available', u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_pathways.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_query.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_recessive_and_dominant.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_region.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_roh.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_stats.test_tool_000000", "has_data": true}, {"data": {"status": "error", "inputs": {}, "problem_type": "base.interactor.RunToolException", "problem_log": "Traceback (most recent call last):\n  File \"/usr/lib/python2.7/unittest/case.py\", line 331, in run\n    testMethod()\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 268, in test_tool\n    self.do_it( td )\n  File \"/var/lib/jenkins/galaxy/default/test/functional/test_toolbox.py\", line 55, in do_it\n    raise e\nRunToolException: Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}\n-------------------- >> begin captured logging << --------------------\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"GET /api/users?key=test_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\ngalaxy.web.framework.webapp: INFO: Session authenticated using Galaxy master api key\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/users/2891970512fa2d5a/api_key HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/histories HTTP/1.1\" 200 None\nurllib3.connectionpool: INFO: Starting new HTTP connection (1): localhost\nurllib3.connectionpool: DEBUG: Setting read timeout to None\nurllib3.connectionpool: DEBUG: \"POST /api/tools HTTP/1.1\" 400 None\n--------------------- >> end captured logging << ---------------------\n", "execution_problem": "Error creating a job for these tool inputs - {u'type': u'error', u'data': {u'infile': u'History does not include a dataset of the required format / build'}}"}, "id": "functional.test_toolbox.TestForTool_gemini_windower.test_tool_000000", "has_data": true}], "version": "0.1", "summary": {"num_skips": 0, "num_errors": 15, "num_failures": 0, "num_tests": 15}}