diff gemini_roh.xml @ 2:e6512af21622 draft

Uploaded

--- a/gemini_roh.xml	Mon Aug 11 07:45:22 2014 -0400
+++ b/gemini_roh.xml	Sun Aug 24 17:49:00 2014 -0400
@@ -9,15 +9,17 @@
     <command>
 <![CDATA[
         gemini @BINARY@
-          --min-snps $min_snps
-          --min-total-depth $min_total_depth
-          --min-gt-depth $min_gt_depth
-          --min-size $min_size
-          --max-hets §max_hets
-          --max-unknowns $max_unknowns
-          -s $samples
+            --min-snps $min_snps
+            --min-total-depth $min_total_depth
+            --min-gt-depth $min_gt_depth
+            --min-size $min_size
+            --max-hets $max_hets
+            --max-unknowns $max_unknowns
+            #if $samples.strip() != '':
+                -s "${samples}"
+            #end if
             "${ infile }"
-            -> "${ outfile }"
+            > "${ outfile }"
 ]]>
     </command>
     <expand macro="stdio" />