diff data_manager/data_manager_gemini_download.xml @ 20:b5207530f991 draft default tip

planemo upload for repository https://github.com/galaxyproject/tools-devteam/tree/master/data_managers/data_manager_gemini_downloader commit e88029bb12e5262687267293f9d2a694eb00d3f0-dirty

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/data_manager/data_manager_gemini_download.xml	Tue Dec 29 10:19:47 2015 -0500
@@ -0,0 +1,36 @@
+<tool id="data_manager_gemini_download" name="GEMINI Download" version="0.18.1" tool_type="manage_data">
+    <description>Download a new database</description>
+    <requirements>
+        <requirement type="package" version="0.18.1">gemini</requirement>
+    </requirements>
+    <stdio>
+        <exit_code range=":-1"  level="fatal" description="Error: Cannot open file" />
+        <exit_code range="1:"  level="fatal" description="Error" />
+    </stdio>
+    <command interpreter="python">
+        data_manager_gemini_download.py "$out_file"
+    </command>
+    <inputs>
+        <param name="cadd" type="boolean" truevalue="--extra cadd_score" falsevalue="" checked="True"
+            label="Download CADD scores for GEMINI database annotation" help="(--extra cadd_score)"/>
+        <param name="gerp_bp" type="boolean" truevalue="--extra gerp_bp" falsevalue="" checked="True"
+            label="Download GERP for GEMINI database annotation" help="(--extra gerp_bp)"/>
+    </inputs>
+    <outputs>
+           <data name="out_file" format="data_manager_json" label="${tool.name}"/>
+    </outputs>
+    <tests>
+    </tests>
+    <help>
+
+This tool downloads the GEMINI databases.
+
+For details about this tool, please go to http://gemini.readthedocs.org
+
+    </help>
+    <citations>
+        <citation type="doi">10.1371/journal.pcbi.1003153</citation>
+        <yield />
+    </citations>
+</tool>
+